Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2073 ATGATTCCTTGGGGTGGTCTCAGTTGCTGTTTAAGTGCTGCTGCTCTTTACCTTCTCGGCAGAAGCAGTGGCAGGGATGCGGAAATTCTTAAATCCGTTACGAGGGTCAATCAGTTGAAGGAACTAGCACAACTGTTAGATGCGGAAATATTACCCTTGATTGTTACAATTTCTGGAAGAGTTGTCTCTGAAATTCCAATTAACTGCGAGTTCAGTGGTTTAAGAGGTGTAATAGTTGAAGAAACAGCAGAGCAACATTTTCTTAAACACAATGATGCTGGTTCCTGGATACAAGATTCTGCTTTGATGCTATCAATGAGTAAAGAGGTTCCTTGGTATCTGGATGATGGGACTGATCGTGTGCATGTGGTTGGAGCTCGGGGTGCCACTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCGGGTCGATCACTTGTACGTGGAACATTGGATTATCTCCAAGGTCTCAAGATGCTTGGAGTTAAGAGAATTGAACGTGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGATGTTGGGAGCATTCGAATTCAGCGACCCCACAAAGGGCCATTTTATGTCTCCCCCAAAACAATTGATCAACTAATTGCAAATCTGGGCAAATGGGCAAGGTGGTATAAGTATGCTTCTATGGGCTTGACAGTGTTTGGTGCTTATCTGATAGCCAAGCATGCTATTCGGTACATATTGGAAAGACGGCGCCGAGGCGAACTTCAAAGAAGGGTTCTTGCTGCAGCTGCCAAGAAGTCGGGACAAAATAATGAAGGTGAAAGGGCTGACAGCTTATCAGATGGTGCTAAAAGGGATCGCTTATTGCCAGACTTGTGTGTAATATGCCTTGAACAGGAGTATAATGCTGTTTTTGTTCCGTGTGGGCATATGTGCTGCTGTACAGCTTGTTCTTCACACTTGACCAATTGTCCTCTCTGCCGGCGACAGATAGAGAAGGTTGTGAAGACTTTCCGTCATTGA 1020 0.4461 MIPWGGLSCCLSAAALYLLGRSSGRDAEILKSVTRVNQLKELAQLLDAEILPLIVTISGRVVSEIPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTDRVHVVGARGATGFVLPVGSEAFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGSIRIQRPHKGPFYVSPKTIDQLIANLGKWARWYKYASMGLTVFGAYLIAKHAIRYILERRRRGELQRRVLAAAAKKSGQNNEGERADSLSDGAKRDRLLPDLCVICLEQEYNAVFVPCGHMCCCTACSSHLTNCPLCRRQIEKVVKTFRH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2073 339 SUPERFAMILY RING/U-box 285 333 - -
Ssu7g2073 339 CDD RING-HC_LRSAM1 291 330 - -
Ssu7g2073 339 Pfam Zinc finger, C3HC4 type (RING finger) 290 333 - -
Ssu7g2073 339 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 338 IPR013083 -
Ssu7g2073 339 ProSiteProfiles Zinc finger RING-type profile. 292 327 IPR001841 -
Ssu7g2073 339 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 1 306 - -
Ssu7g2073 339 PANTHER - 1 306 IPR044231 GO:0004842|GO:0016567
Ssu7g2073 339 Pfam E3 Ubiquitin ligase 85 233 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2073 Ssu-Chr7 41065502 41074868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2073 1 272 C3H Transcription Factor Family AT1G63900 77.372 1.06e-154 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2073 K15688 - gmx:100803252 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2073 7 41065502 41074868 Ssu7g2073 7 41065502 41074868 ECH