Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu7g2065 | ATGGAAACAATGCGTGCGTCAGATACAGGAAATTCCTCATTTTTCCCCCAGTCTTGCGGTTCGTGGCCGAGTGTAATTGTTCCTGAAATGGATAAAACGGATGATGGCGAGGACAGACAGGATAAAGGGTGTAAGAACAAGAGAAAATTAACTCATCCTTCTATACTTCCTGCTAGTTTTCCATCCTCTCTGATTGAGTTCCCTCGGTATGAATTACCCATGTCACAAAATGGCTTAAATGAATTTAGTTCATCAGAGTTGTGGCCAGATTTGTTTAGAGAAGAAGAACCTGAACTGCATATGCATGAGCTTGTGGACTGGAATGATCCTATTGCAAGCCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCAATTTTCAGCGGTGCACTCAAGCGGGTTGTTGAATTAGGCTTTGATGAAAAATTGGTTGAAATGTCCCTTTCAAGGAAGGCCCTATACCTTGAGGAAGGAGACCCTGTCTCGAATATTGTATGTGAGACAGTGAAAGTTTTGAAGGGAAAAGATGATATTATTACagattttatatttgaaaattttcagcaCTTGTTGCATTACACCATGGTGGAGATGATCAGTGTAGTTCGTGAAGTCAGACCCTCCTTGACAGTTGGTGAAGCAATGTGGGTTTTGCTGATATGTGACTTGAACCTTTCACTAGCCTGTGCAGTGGAAGATCAACTGAGTGTTGTTTGTAATGGGGAAAACTCCACCACTTCTTCTGGTCCCCAATCTAAGTCAGAGGTCCGAATCTctgatataatttcaaattgcGGTTCACCTACTTTCCAGAAGGACTTGTCCACCAATCACCAGAATCAGAAGTCTGAAGAACCCAAGTTTGGAAGTTTCCTGAATTCACCCAACAATCAAAGTCCTCATGCTTCAGGAGGGGTAAAAGTTAAGGCAGAGAATGCTTCTTTGCCAATTACTGCAGAGAAATCCTCTGGAACTTCAGGGGTTCCTGCCCAGGAATGTAAATCAGGATCTTGTTCTAAGCGGCATAACAGAAAAGAAATAGCAGCACTTAGGCAGAAATTCCTTCATATGGAAAAAGCTTACAGGGCTTGTGGAAAAGGGGGTTTTAAATCAGGGAAGATTGCAAGTGTTGGTGGTTTGGTTGTTGAAAAAAGACTCAAGCCACCATCTGAAATTCCTAATCAGCAAATGAAATGTGGCTCTACAAATATGATAAGCATGAAAGGAGTTCGCTCAGCTGATGTAGTGTGCCATGTTTCAATCAATGATGCATCTATCTTACCTGCGGGAGGTAGCTCTGGAACATTACCCACAAAGGATACAATATCTACTTCTCCCATGGTTAATGCAAATACTTCAACACCAGGCAATACATCCAAGCCAAAATCTGAGGTAAGCTGCTTTTCTGTCAAGGTTCTTGATTACTGTGCTGGTATTCCTTTTGATGAGGCTTTGGGTAAGTATGTCCCGCGAGATGAGAAGGATGGGCTAATTTTGAAGTTAATACCTCGAGTGCAAGAATTGCATGATGAGCTACAAGGCTGGAACAACTGGACAAGTCAGAAGGTTATGCAGGTTACCAATAGGCTTGGCAAACTACAGGCTGAATTTAAAACTCTGAGGAAGGAGAAGCAAGATGCTGAACtgttgaaaaaagataagaaaattgTGGAGGAGAATGCTGTGAAGAGGATATCTGAAATGGAGAATGCCATGGAAAATACTAAAAGGCAAATTGAGAGTGCTGCTTCTGCTACTCTCGTGCTAGAGGCAGAAAACTCCTTGCTGAAGAAGGAGTTAGATGCTGCTAAGTTATGGGTTGTAAAGTCAATGACAAGCCATCAACAAGCACTGGAGAGAGAGCAGATGGCTCTTAAACAGGCCCAGTCATGGGAAAGCCAGAACAGTTTGCTTCGAGAGGAGCTTGAGAGAGAGAAgaacaaattatttaatctgCAACAGGAGCTACACAAAGAGAAAAATCTTCAAGCCAAGGTTGAGGGTAGATTGGCAAAAGAAAGAGCTGCGAAAGAAAAGCTCCTTGCACAGGCTGCATCTattaaaaaggagagagaaCAACTTGAACAGTGCACGAAATCTGAGGAAGATACGATTAGAAAGAAGGCAGCTAGTGATCTGCAGAAATATGTGGAAGATATTGGAAAGCTAGAAATAGAATTGGTCGACTTGAAACTAAAATCTGATTCTGAAAAAATAGCAGCACTTCGTAGGTGTGTTGATGAAAGGAATGATAGTTTTTCAAGAACAAAGAGTACTCCAAACATGAAGGGAAACAAGAACTCTGCTACATCTCAAACAATGGtgagctgccaagacaaattgGCTGCTGGAAGTTTGAGGCAGGAGCAGGAGTGTGTCATGTGCCTATCAGAGGAGATGTCAGTAGTTTTTCTGCCATGTGCGCATCAGGTTTTATGTCCTGAATGCAATGATCTCCATGAGAAGCAAGGGATGAAGGACTGCCCTTCATGTAGGACCCCAATCCAACATAGGATTCATGCTAGATTTGCTGGGCATTAG | 2541 | 0.4077 | METMRASDTGNSSFFPQSCGSWPSVIVPEMDKTDDGEDRQDKGCKNKRKLTHPSILPASFPSSLIEFPRYELPMSQNGLNEFSSSELWPDLFREEEPELHMHELVDWNDPIASQLEELLLSNLQAIFSGALKRVVELGFDEKLVEMSLSRKALYLEEGDPVSNIVCETVKVLKGKDDIITDFIFENFQHLLHYTMVEMISVVREVRPSLTVGEAMWVLLICDLNLSLACAVEDQLSVVCNGENSTTSSGPQSKSEVRISDIISNCGSPTFQKDLSTNHQNQKSEEPKFGSFLNSPNNQSPHASGGVKVKAENASLPITAEKSSGTSGVPAQECKSGSCSKRHNRKEIAALRQKFLHMEKAYRACGKGGFKSGKIASVGGLVVEKRLKPPSEIPNQQMKCGSTNMISMKGVRSADVVCHVSINDASILPAGGSSGTLPTKDTISTSPMVNANTSTPGNTSKPKSEVSCFSVKVLDYCAGIPFDEALGKYVPRDEKDGLILKLIPRVQELHDELQGWNNWTSQKVMQVTNRLGKLQAEFKTLRKEKQDAELLKKDKKIVEENAVKRISEMENAMENTKRQIESAASATLVLEAENSLLKKELDAAKLWVVKSMTSHQQALEREQMALKQAQSWESQNSLLREELEREKNKLFNLQQELHKEKNLQAKVEGRLAKERAAKEKLLAQAASIKKEREQLEQCTKSEEDTIRKKAASDLQKYVEDIGKLEIELVDLKLKSDSEKIAALRRCVDERNDSFSRTKSTPNMKGNKNSATSQTMVSCQDKLAAGSLRQEQECVMCLSEEMSVVFLPCAHQVLCPECNDLHEKQGMKDCPSCRTPIQHRIHARFAGH | 846 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 441 | 461 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 30 | 48 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 755 | 771 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 316 | 333 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 752 | 771 | - | - | |
Ssu7g2065 | 846 | Pfam | Zinc finger, C3HC4 type (RING finger) | 789 | 837 | - | - | |
Ssu7g2065 | 846 | PANTHER | OS05G0141500 PROTEIN | 19 | 844 | IPR046934 | - | |
Ssu7g2065 | 846 | Coils | Coil | 706 | 733 | - | - | |
Ssu7g2065 | 846 | Coils | Coil | 670 | 697 | - | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 272 | 338 | - | - | |
Ssu7g2065 | 846 | SUPERFAMILY | RING/U-box | 786 | 838 | - | - | |
Ssu7g2065 | 846 | Coils | Coil | 628 | 662 | - | - | |
Ssu7g2065 | 846 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 778 | 842 | IPR013083 | - | |
Ssu7g2065 | 846 | MobiDBLite | consensus disorder prediction | 272 | 303 | - | - | |
Ssu7g2065 | 846 | Coils | Coil | 523 | 585 | - | - | |
Ssu7g2065 | 846 | Pfam | Family of unknown function (DUF6592) | 122 | 231 | IPR046527 | - | |
Ssu7g2065 | 846 | ProSiteProfiles | Zinc finger RING-type profile. | 792 | 832 | IPR001841 | - | |
Ssu7g2065 | 846 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED | 19 | 844 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu7g2065 | Ssu-Chr7 | 40899835 | 40904019 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu7g2065 | 792 | 839 | C3H Transcription Factor Family | AT1G73950 | 45.833 | 5.32e-06 | 47.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu7g2065 | - | - | gmx:100793172 | 1433.7 |