Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2065 ATGGAAACAATGCGTGCGTCAGATACAGGAAATTCCTCATTTTTCCCCCAGTCTTGCGGTTCGTGGCCGAGTGTAATTGTTCCTGAAATGGATAAAACGGATGATGGCGAGGACAGACAGGATAAAGGGTGTAAGAACAAGAGAAAATTAACTCATCCTTCTATACTTCCTGCTAGTTTTCCATCCTCTCTGATTGAGTTCCCTCGGTATGAATTACCCATGTCACAAAATGGCTTAAATGAATTTAGTTCATCAGAGTTGTGGCCAGATTTGTTTAGAGAAGAAGAACCTGAACTGCATATGCATGAGCTTGTGGACTGGAATGATCCTATTGCAAGCCAGCTTGAGGAATTACTGTTGTCTAATTTGCAAGCAATTTTCAGCGGTGCACTCAAGCGGGTTGTTGAATTAGGCTTTGATGAAAAATTGGTTGAAATGTCCCTTTCAAGGAAGGCCCTATACCTTGAGGAAGGAGACCCTGTCTCGAATATTGTATGTGAGACAGTGAAAGTTTTGAAGGGAAAAGATGATATTATTACagattttatatttgaaaattttcagcaCTTGTTGCATTACACCATGGTGGAGATGATCAGTGTAGTTCGTGAAGTCAGACCCTCCTTGACAGTTGGTGAAGCAATGTGGGTTTTGCTGATATGTGACTTGAACCTTTCACTAGCCTGTGCAGTGGAAGATCAACTGAGTGTTGTTTGTAATGGGGAAAACTCCACCACTTCTTCTGGTCCCCAATCTAAGTCAGAGGTCCGAATCTctgatataatttcaaattgcGGTTCACCTACTTTCCAGAAGGACTTGTCCACCAATCACCAGAATCAGAAGTCTGAAGAACCCAAGTTTGGAAGTTTCCTGAATTCACCCAACAATCAAAGTCCTCATGCTTCAGGAGGGGTAAAAGTTAAGGCAGAGAATGCTTCTTTGCCAATTACTGCAGAGAAATCCTCTGGAACTTCAGGGGTTCCTGCCCAGGAATGTAAATCAGGATCTTGTTCTAAGCGGCATAACAGAAAAGAAATAGCAGCACTTAGGCAGAAATTCCTTCATATGGAAAAAGCTTACAGGGCTTGTGGAAAAGGGGGTTTTAAATCAGGGAAGATTGCAAGTGTTGGTGGTTTGGTTGTTGAAAAAAGACTCAAGCCACCATCTGAAATTCCTAATCAGCAAATGAAATGTGGCTCTACAAATATGATAAGCATGAAAGGAGTTCGCTCAGCTGATGTAGTGTGCCATGTTTCAATCAATGATGCATCTATCTTACCTGCGGGAGGTAGCTCTGGAACATTACCCACAAAGGATACAATATCTACTTCTCCCATGGTTAATGCAAATACTTCAACACCAGGCAATACATCCAAGCCAAAATCTGAGGTAAGCTGCTTTTCTGTCAAGGTTCTTGATTACTGTGCTGGTATTCCTTTTGATGAGGCTTTGGGTAAGTATGTCCCGCGAGATGAGAAGGATGGGCTAATTTTGAAGTTAATACCTCGAGTGCAAGAATTGCATGATGAGCTACAAGGCTGGAACAACTGGACAAGTCAGAAGGTTATGCAGGTTACCAATAGGCTTGGCAAACTACAGGCTGAATTTAAAACTCTGAGGAAGGAGAAGCAAGATGCTGAACtgttgaaaaaagataagaaaattgTGGAGGAGAATGCTGTGAAGAGGATATCTGAAATGGAGAATGCCATGGAAAATACTAAAAGGCAAATTGAGAGTGCTGCTTCTGCTACTCTCGTGCTAGAGGCAGAAAACTCCTTGCTGAAGAAGGAGTTAGATGCTGCTAAGTTATGGGTTGTAAAGTCAATGACAAGCCATCAACAAGCACTGGAGAGAGAGCAGATGGCTCTTAAACAGGCCCAGTCATGGGAAAGCCAGAACAGTTTGCTTCGAGAGGAGCTTGAGAGAGAGAAgaacaaattatttaatctgCAACAGGAGCTACACAAAGAGAAAAATCTTCAAGCCAAGGTTGAGGGTAGATTGGCAAAAGAAAGAGCTGCGAAAGAAAAGCTCCTTGCACAGGCTGCATCTattaaaaaggagagagaaCAACTTGAACAGTGCACGAAATCTGAGGAAGATACGATTAGAAAGAAGGCAGCTAGTGATCTGCAGAAATATGTGGAAGATATTGGAAAGCTAGAAATAGAATTGGTCGACTTGAAACTAAAATCTGATTCTGAAAAAATAGCAGCACTTCGTAGGTGTGTTGATGAAAGGAATGATAGTTTTTCAAGAACAAAGAGTACTCCAAACATGAAGGGAAACAAGAACTCTGCTACATCTCAAACAATGGtgagctgccaagacaaattgGCTGCTGGAAGTTTGAGGCAGGAGCAGGAGTGTGTCATGTGCCTATCAGAGGAGATGTCAGTAGTTTTTCTGCCATGTGCGCATCAGGTTTTATGTCCTGAATGCAATGATCTCCATGAGAAGCAAGGGATGAAGGACTGCCCTTCATGTAGGACCCCAATCCAACATAGGATTCATGCTAGATTTGCTGGGCATTAG 2541 0.4077 METMRASDTGNSSFFPQSCGSWPSVIVPEMDKTDDGEDRQDKGCKNKRKLTHPSILPASFPSSLIEFPRYELPMSQNGLNEFSSSELWPDLFREEEPELHMHELVDWNDPIASQLEELLLSNLQAIFSGALKRVVELGFDEKLVEMSLSRKALYLEEGDPVSNIVCETVKVLKGKDDIITDFIFENFQHLLHYTMVEMISVVREVRPSLTVGEAMWVLLICDLNLSLACAVEDQLSVVCNGENSTTSSGPQSKSEVRISDIISNCGSPTFQKDLSTNHQNQKSEEPKFGSFLNSPNNQSPHASGGVKVKAENASLPITAEKSSGTSGVPAQECKSGSCSKRHNRKEIAALRQKFLHMEKAYRACGKGGFKSGKIASVGGLVVEKRLKPPSEIPNQQMKCGSTNMISMKGVRSADVVCHVSINDASILPAGGSSGTLPTKDTISTSPMVNANTSTPGNTSKPKSEVSCFSVKVLDYCAGIPFDEALGKYVPRDEKDGLILKLIPRVQELHDELQGWNNWTSQKVMQVTNRLGKLQAEFKTLRKEKQDAELLKKDKKIVEENAVKRISEMENAMENTKRQIESAASATLVLEAENSLLKKELDAAKLWVVKSMTSHQQALEREQMALKQAQSWESQNSLLREELEREKNKLFNLQQELHKEKNLQAKVEGRLAKERAAKEKLLAQAASIKKEREQLEQCTKSEEDTIRKKAASDLQKYVEDIGKLEIELVDLKLKSDSEKIAALRRCVDERNDSFSRTKSTPNMKGNKNSATSQTMVSCQDKLAAGSLRQEQECVMCLSEEMSVVFLPCAHQVLCPECNDLHEKQGMKDCPSCRTPIQHRIHARFAGH 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2065 846 MobiDBLite consensus disorder prediction 441 461 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 1 48 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 30 48 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 755 771 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 316 333 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 752 771 - -
Ssu7g2065 846 Pfam Zinc finger, C3HC4 type (RING finger) 789 837 - -
Ssu7g2065 846 PANTHER OS05G0141500 PROTEIN 19 844 IPR046934 -
Ssu7g2065 846 Coils Coil 706 733 - -
Ssu7g2065 846 Coils Coil 670 697 - -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 272 338 - -
Ssu7g2065 846 SUPERFAMILY RING/U-box 786 838 - -
Ssu7g2065 846 Coils Coil 628 662 - -
Ssu7g2065 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 778 842 IPR013083 -
Ssu7g2065 846 MobiDBLite consensus disorder prediction 272 303 - -
Ssu7g2065 846 Coils Coil 523 585 - -
Ssu7g2065 846 Pfam Family of unknown function (DUF6592) 122 231 IPR046527 -
Ssu7g2065 846 ProSiteProfiles Zinc finger RING-type profile. 792 832 IPR001841 -
Ssu7g2065 846 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RF298-RELATED 19 844 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2065 Ssu-Chr7 40899835 40904019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2065 792 839 C3H Transcription Factor Family AT1G73950 45.833 5.32e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2065 - - gmx:100793172 1433.7