Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2063 ATGAGTCGCACGAACCCcgtcctcctctttctcttcctctctctccccCTTTCTTCCCTCTCTGCCACGTGTCCCCTGAACTTCACCATCCTCGGCGGCAACAAACCCTCCTCCTTCGACTCGTCGCGGTGCCAGGTCATCAGCCAGGCCCTCCGCCTCGTCCAGTCGGACTACCTCCGCCGCAGCAACTCCTTCGTCCCCGCCCTCAACACCTCCGAGTCGTGCTGGGATCACTTCCAGTCCTACGTGAACCGCTTCGACCCCACCTTCGACATTCGCTCCTCGTGCGGCTTCCAAACCGCTTGGATCTCCCAGGGTTGCGCCAACGTCACCACCCGACAACAGTTCGAAGCCGTGGTTCCTCCCTCCGCGCTTCAGAACCTGCGCGCCAATTGTAACCAGTCGCTCGAGAACAACTCCCCCTGCGCCCTCTGCACCTCCTCGTTCTCCACCTTGCCGTCGTTGGGACAACCCGTTGGGAACCTCTCCGACTGCACCGGCTACCCTTCTATTTACGCCGCCGCTTTCGCCAACCAGTTTGGACCCTCCGACCCCGGCACCGCCACGTGCTTGTTCTTGCTCGGTCTTTCCTCGGGCGGTTCCTCTTCCGCGAAGAAAAAGGTTGTTATCGCGGTTGTCTCCGTTGTCTGTGTCTTGGCTTTGTCGCTGCTGGTTCTCGGGTTCTGGGCTTATTGCAAGTTGGATGACAAGTTGGCCGGGGATAAGGACGTTCGTGTCGCGGAGATGGGTTTGGTTTCTGGGCTTGATTCCATGGAGCAGAGCACCACTTTGATGAGGTTCACTATTGATGATGTTAAGAAGGCGACTAAGAACTTCTCCAGGGACAACATAATCGGCAGAGGGGGTTATGGGAATGTGTATAAAGGGCTGTTGGCCGATGGGAGTGAGGTTGCGTTTAAGAGGTTCAAGAATTGTTCGGCTGCCGGTGATGCGAGCTTCACCCACGAAGTTGAGGTTATTGCGAGTGTTAGGCATGTTAATCTTGTTGCCTTGAGAGGTTATTGTTCTGTCACTACTCGTTTAGAGGGTTACCAGAGGATTATTGTTTGCGATTTGGTGAAAAACGGGAGCCTCCATGACCATTTGTTTGGTTCTAATGGGGTTAAACTTAGTTGGCCAATCCGTCAGCATATCGCTCTAGGCACGGCTAGGGGGTTGGCTTATTTGCATTATGGGGCTCAGCCTGCTATCATTCACAGGGATATTAAAGCAAGTAACATACTTCTGGATGATAAGTTTGAAGCTAAGGTAGCAGATTTTGGACTGGCCAAGTTTAACCCTGAGGGGATGACGCATATGAGCACTAGGGTGGCTGGGACCATGGGGTATGTTGCTCCCGAGTATGCTTTGTATGGGCAATTGACAGAGAGAAGTGATGTGTTCAGTTTTGGGGTTGTGCTGCTTGAGCTTTTGAGTGGGAGGAAGGCGCTTCAGACAAACAATGATGGTCAACCCTCTGCTTTGACTGATTGGGCTTGGTCATTAGTTAGAACTGGCAAAACTTTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTTCGCCACAAGTTCTTGAGAAGTATGTGTTAATTGCCGTGCTTTGTTCTCATCCGCAGTTGTATGCCAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGATGAATCATTGCCCTCAATACCCGAACGGCCAATCCCTATTGTTGCTGGGAGGCTTGATATTGAAAGATCTGTGAGCAGTAGTGGCTCCGGTCAGCTCTCTAGTCCAACAGGTTATCAATCATATACTCTAGAAAGTGACCGCCAATCTTCTAATTCTATGGAAGAAAGAAGCTCGGGCTCTAGGATTTTAAGTACTGATTGA 1869 0.5072 MSRTNPVLLFLFLSLPLSSLSATCPLNFTILGGNKPSSFDSSRCQVISQALRLVQSDYLRRSNSFVPALNTSESCWDHFQSYVNRFDPTFDIRSSCGFQTAWISQGCANVTTRQQFEAVVPPSALQNLRANCNQSLENNSPCALCTSSFSTLPSLGQPVGNLSDCTGYPSIYAAAFANQFGPSDPGTATCLFLLGLSSGGSSSAKKKVVIAVVSVVCVLALSLLVLGFWAYCKLDDKLAGDKDVRVAEMGLVSGLDSMEQSTTLMRFTIDDVKKATKNFSRDNIIGRGGYGNVYKGLLADGSEVAFKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCSVTTRLEGYQRIIVCDLVKNGSLHDHLFGSNGVKLSWPIRQHIALGTARGLAYLHYGAQPAIIHRDIKASNILLDDKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNNDGQPSALTDWAWSLVRTGKTLDVIEDGMPEPGSPQVLEKYVLIAVLCSHPQLYARPTMDQVVKMMETDESLPSIPERPIPIVAGRLDIERSVSSSGSGQLSSPTGYQSYTLESDRQSSNSMEERSSGSRILSTD 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2063 622 Pfam Protein kinase domain 280 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2063 622 SMART serkin_6 279 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2063 622 Gene3D Transferase(Phosphotransferase) domain 1 360 561 - -
Ssu7g2063 622 CDD STKc_IRAK 285 554 - -
Ssu7g2063 622 ProSiteProfiles Protein kinase domain profile. 279 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2063 622 ProSitePatterns Protein kinases ATP-binding region signature. 285 307 IPR017441 GO:0005524
Ssu7g2063 622 Gene3D Phosphorylase Kinase; domain 1 247 358 - -
Ssu7g2063 622 Pfam SPARK 20 152 IPR043891 -
Ssu7g2063 622 PANTHER OS01G0253100 PROTEIN 12 607 IPR045271 GO:0004714|GO:0006468
Ssu7g2063 622 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 12 607 - -
Ssu7g2063 622 MobiDBLite consensus disorder prediction 578 622 - -
Ssu7g2063 622 SUPERFAMILY Protein kinase-like (PK-like) 261 567 IPR011009 -
Ssu7g2063 622 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2063 Ssu-Chr7 40867196 40869064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2063 3 608 Receptor kinase-like Gene Family AT2G48010 63.295 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Ssu7g2063 Pkinase 2.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2063 - - gmx:100800760 1014.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2063 7 40867196 40869064 Ssu7g2063 7 40867196 40869064 ECH
Ssu4g1366 4 22515654 22517351 Ssu7g2063 7 40867196 40869064 PCT