Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2062 ATGCAACCTGCGTCCCCCTGCAGGTCATCATGGAAAATCTTTACCCATCATGAGATACTGGTTGCATCCAATTCTTTTAGCAAAGAAAATTTGATTGGGAAGGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTGGCCATTAAACGGTTAACAAGAGGAACAGCTGATGAAATCATAGGGGACTTCTTATCAGAACTTGGGGTAATGGCGCATGTAAACCATCCCAATACTGCTAAGCTGGTTGGCTATGGGGTGGACGGTGGAATGTATCTAGTTCTTGAGTTGTCTGAAAAAGGGAGCCTAGCTTCAGTTCTTTATGGCTCCAAGGAGAAACTACCGTGGTGTATTAGGCACAAAATTGCATTAGGAACAGCCAAGGGCATATTGTATCTTCATGAGGGTTGTCAAAGAAGAATTATCCACAGGGATATAAAAGCTGCCAATATCTTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGTTACCAGAAAATTGGACTCATCACACcgtttcaaaatttgaaggaacTTTCGGTTACTTAGCTCCTGAATACTTACTGCATGGCATAGTAGACGAGAAAACGGACGTATTTGCCTTTGGTGTATTGCTGTTAGAATTAGTGAGTGGGCGGCGAGCACTTGATTATTCACAGCAAAGCCTTGTGTTGTGGGCTAAACCATTGctgaaaaaaatgatattatggAGCTGA 747 0.4123 MQPASPCRSSWKIFTHHEILVASNSFSKENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMYLVLELSEKGSLASVLYGSKEKLPWCIRHKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQQSLVLWAKPLLKKMILWS 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2062 248 ProSiteProfiles Protein kinase domain profile. 26 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2062 248 SUPERFAMILY Protein kinase-like (PK-like) 11 229 IPR011009 -
Ssu7g2062 248 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Ssu7g2062 248 Pfam Protein kinase domain 27 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2062 248 SMART serkin_6 26 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2062 248 ProSitePatterns Protein kinases ATP-binding region signature. 32 54 IPR017441 GO:0005524
Ssu7g2062 248 Gene3D Phosphorylase Kinase; domain 1 3 100 - -
Ssu7g2062 248 PIRSF ILK 4 233 - -
Ssu7g2062 248 Gene3D Transferase(Phosphotransferase) domain 1 103 246 - -
Ssu7g2062 248 PANTHER OS08G0249100 PROTEIN 5 243 - -
Ssu7g2062 248 PANTHER PROTEIN KINASE FAMILY PROTEIN 5 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2062 Ssu-Chr7 40845872 40847459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2062 9 245 Trihelix Transcription Factor Family AT1G68690 43.443 7.43e-61 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu7g2062 Pkinase 4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2062 - - gmx:100780587 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2062 7 40845872 40847459 Ssu4g0321 4 5334158 5337612 ECH
Ssu7g2062 7 40845872 40847459 Ssu7g1667 7 34644676 34647393 ECH
Ssu7g2062 7 40845872 40847459 Ssu7g2062 7 40845872 40847459 ECH
Ssu1g0785 1 17232848 17234285 Ssu7g2062 7 40845872 40847459 ECH