Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2050 ATGAAGATCAGAATTTTGCTAGTAACTTGTCTGGTACTTTTGGGTATCCTTGGGGTTTGCCAAGGAGGAAGCCTAAGGAAAAACTTCTACCGGGATTCCTGCCCTCAAGCAGAGGACATTATTAAGTGCAAAACCCAGCAGCATGTGTCTGCTAATCCCAATTTGCCGGCCAAGTTGCTTAGAATGCATTTTCATGATTGTTTCGTCAggGGTTGTGATGCCTCGGTTTTGTTGAACTCCACTGCCAATAACGCTGCAGAGAGGGATGCAATTCCAAATTTATCATTGTTTGGCTTTGATGTCATAGATGACATAAAAAATGCGGTGGAGGCAAAATGTCCCAAAACTGTATCTTGTGCTGACATATTGGCATTGGCAGCTAGGGACGCTGTTTCTGTCCAATTTAATAAACCTATGTGGGAAGTGCTCACTGGAAGAAGAGATGGCACGGTATCGAAAAGTAACGAAGCCTTGGCCAATATCCCAGCACCTTTTTTCAACTTCACCCAACTCAAACAGAGCTTTGCTAGCAAAGGTCTCACATTGCACGATCTGGTTGTATTATCAGGGGCACACACAATTGGAGTAGGGCATTGCAACTTGTTCAGTAACAGGCTTTATAATTTCACCGGAAAAGGGGATCAAGACCCTTCTTTGAATTCCACTTATGCTGCATTCTTGAAGACAAAGTGCCGGAGCCTGAGTGACACAACCACAACGGTAGAAATGGATCCTGGCAGCTCTACCAATTTCGATAGTGACTATTATCCTAACCTTCTCCAGAACAAGGGTCTGTTCCAATCAGACGCTGCCCTTCTAACACAAGACCAGTCAGCGGATATGGCTAAAGAATTGGTAGACCAAAGCAAGTTCTTCACAGAGTTCGCACAGTCAATGAAGAGAATGGGAGCCATTGGGGTCCTCACTGGCTCTGCCGGAGAAATACGGATCAAGTGTTCGGTTGTCAACTCATAA 975 0.4472 MKIRILLVTCLVLLGILGVCQGGSLRKNFYRDSCPQAEDIIKCKTQQHVSANPNLPAKLLRMHFHDCFVRGCDASVLLNSTANNAAERDAIPNLSLFGFDVIDDIKNAVEAKCPKTVSCADILALAARDAVSVQFNKPMWEVLTGRRDGTVSKSNEALANIPAPFFNFTQLKQSFASKGLTLHDLVVLSGAHTIGVGHCNLFSNRLYNFTGKGDQDPSLNSTYAAFLKTKCRSLSDTTTTVEMDPGSSTNFDSDYYPNLLQNKGLFQSDAALLTQDQSADMAKELVDQSKFFTEFAQSMKRMGAIGVLTGSAGEIRIKCSVVNS 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2050 324 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 297 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 CDD secretory_peroxidase 25 322 IPR033905 GO:0004601|GO:0042744
Ssu7g2050 324 Pfam Peroxidase 44 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 Gene3D Peroxidase, domain 2 162 302 - -
Ssu7g2050 324 PANTHER PEROXIDASE 25-RELATED 4 322 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 SUPERFAMILY Heme-dependent peroxidases 25 323 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PANTHER PEROXIDASE 4 322 - -
Ssu7g2050 324 Gene3D - 28 323 - -
Ssu7g2050 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Ssu7g2050 324 ProSiteProfiles Plant heme peroxidase family profile. 24 323 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu7g2050 324 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2050 Ssu-Chr7 40710226 40711601 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2050 3 324 Peroxidase AT1G05260 57.538 4.08e-124 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2050 K00430 - gmx:100799691 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2050 7 40710226 40711601 Ssu7g2050 7 40710226 40711601 ECH
Ssu4g0713 4 11115150 11116646 Ssu7g2050 7 40710226 40711601 PCT