Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2047 ATGGCGGAGGGGAAGGAAGAGGGTAAATCTAGTTGCGAGGAGAGTGTGAAGCTGTTCGTAGGTCAAGTGCCGAAGCGCATGACGGAAGATGAAGTGCTTGCAATGTTCAAGGAGTTCGCGTTGGTTGACGAGGTCAACATCATCAGGGACAAACTTACTCGTTCCTCCCGAGGTTGTTGCTTTGTAATCTGTCCCTCGACGGAAGAAGCGGATAAGGCGGTCAATGCCTGTCATAACAAGAAGACGCTTCCTGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGTGAATTGGAAAGATTAGAACACAAACTCTTTGTTGGCATGCTTCCAAAGAATATTTCTGAAGATGAGGTCTCTGATCTTTTTTCAAAGTATGGAACTATAAAGGATTTACGGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTACTGCTCTTGAGGCAATCAATGGAAAGCATAAAATGGAGGGTTCAAGTGTTCCTTTGGTTGTTAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGCAGGGCTCATAAAGCACAATCCCAAGTTTCTAACGTGCCACATGCTGATCCTCAACACCCCTCATTATTTGGGGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGGCTCTTGGGGGTTATGGGCTCATGCCATACCGTTTGCCACCAATGCAGAATCAACCAGGTTTCCATCATATGATGCCTCACATGAGCCAAAGAAACACAGTGAGGCCCGATCTTGGTCACAATATGGACCCTAGAAATTATCCTGCGAGTTACATTGGCTCTTATCCTGCTGTGCCAGGTATACAGCATCCAATGGCATATCCCAGAGGAATTGTAAGTCCAAGGCTAGTGAGTAGTTCTCCTGGTTCTGTTTCACCTGCAGGTGGGAATAGCAACTCTTCATCTTCAGGTGCCAGTAAAAGTTCCAGTGGTCAGATTGAAGGACCACCCGGtgccaatttatttatttatcacataCCTCAAGAATATGGAGACCAAGAGCTTGCAACTTCTTTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTGTTGACAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTACGATACTCCAGAAGCTGCTCAAGCTGCCATTAGTATGATGAATGGTTGTCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGTAAGCTTTACTGA 1287 0.4343 MAEGKEEGKSSCEESVKLFVGQVPKRMTEDEVLAMFKEFALVDEVNIIRDKLTRSSRGCCFVICPSTEEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFVGMLPKNISEDEVSDLFSKYGTIKDLRILRGSQQTSKGCAFLKYETKEQALTALEAINGKHKMEGSSVPLVVKWADTEKERQARRAHKAQSQVSNVPHADPQHPSLFGALPMGYVPPYNGYGYQALGGYGLMPYRLPPMQNQPGFHHMMPHMSQRNTVRPDLGHNMDPRNYPASYIGSYPAVPGIQHPMAYPRGIVSPRLVSSSPGSVSPAGGNSNSSSSGASKSSSGQIEGPPGANLFIYHIPQEYGDQELATSFQPFGRVLSAKIFVDKATGVSKCFGFVSYDTPEAAQAAISMMNGCQLGGKKLKVQLKRDNKQSKLY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2047 428 MobiDBLite consensus disorder prediction 309 337 - -
Ssu7g2047 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 109 124 IPR002343 GO:0003723|GO:1990904
Ssu7g2047 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 16 31 IPR002343 GO:0003723|GO:1990904
Ssu7g2047 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 124 136 IPR002343 GO:0003723|GO:1990904
Ssu7g2047 428 PRINTS Paraneoplastic encephalomyelitis antigen family signature 165 182 IPR002343 GO:0003723|GO:1990904
Ssu7g2047 428 PANTHER RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED 10 415 - -
Ssu7g2047 428 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Ssu7g2047 428 PANTHER RNA BINDING PROTEIN 10 415 - -
Ssu7g2047 428 CDD RRM1_2_CELF1-6_like 17 93 - -
Ssu7g2047 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 97 IPR000504 GO:0003723
Ssu7g2047 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 184 IPR000504 GO:0003723
Ssu7g2047 428 SUPERFAMILY RNA-binding domain, RBD 104 423 IPR035979 GO:0003676
Ssu7g2047 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 169 IPR000504 GO:0003723
Ssu7g2047 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 415 IPR000504 GO:0003723
Ssu7g2047 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 82 IPR000504 GO:0003723
Ssu7g2047 428 Gene3D - 310 420 IPR012677 -
Ssu7g2047 428 CDD RRM3_CELF1-6 345 417 - -
Ssu7g2047 428 CDD RRM1_2_CELF1-6_like 105 180 - -
Ssu7g2047 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 343 421 IPR000504 GO:0003723
Ssu7g2047 428 Gene3D - 100 194 IPR012677 -
Ssu7g2047 428 Gene3D - 2 99 IPR012677 -
Ssu7g2047 428 SMART rrm1_1 105 180 IPR000504 GO:0003723
Ssu7g2047 428 SMART rrm1_1 17 93 IPR000504 GO:0003723
Ssu7g2047 428 SMART rrm1_1 344 417 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2047 Ssu-Chr7 40652957 40657479 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2047 342 427 Eukaryotic Initiation Factors Gene Family AT1G71770 35.227 4.95e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2047 K13207 - gmx:100807662 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2047 7 40652957 40657479 Ssu7g2047 7 40652957 40657479 ECH
Ssu4g0710 4 11083848 11090188 Ssu7g2047 7 40652957 40657479 PCT