Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2028 ATGGACTTGTACGGTCGGGGCCCCGCGAGGAATGGATCGAACCCGGTAAGCCGACCCGAATGGCGCTCACCGGGCACCGACACTGCCCTCGAAGaATCGATGTGGCAATTAACGCTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTGCCTAATTGTGTGTATTACATGCGAACCGGAGTGTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTGCTGCGGTTGCCGCAGCAGTAAGAGCTACAGGGGACTACCCGGAACGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAGACTGGAACATGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAACGGAGGTGGATATTTGAGCCAAGCTCCACTAAATATTTATGGATACCCGTTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAATGGGGCAGTGCAAATTTGGTATATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAATCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCCAGGCCTCCTGTATTACCTGGTTCATATGTGCAAGGGGCTTACGGTCCTGTACTTCTTTCCCCGGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCTCCTGTAAGTCCTGTGCTATCTCCTGGCACTCAACCTGCTGTTGGGGCCACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCCTTTGCTAGACCATATACTCCGCTGTCCTCTACTACAGGCCCTTCAGGAAGTGGCCTGAAGGATCAATTATTTCCTGAAAGACCTGGCGAACCAGAATGCCAATACTATCTGAGAACTGGGGACTGTAAATTTGGATTAGCATGTCGATATCATCATCCTCGGGACCATATTGTGGCACCGCCATTTCTTAGCCCCATTGGACTTCCTTTACGTCCGGTATGTATGGTTACTAACTTGAtttga 1050 0.4981 MDLYGRGPARNGSNPVSRPEWRSPGTDTALEESMWQLTLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNIYGYPLRPGEKECSYYLKMGQCKFGISCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPVLPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVLSPGTQPAVGATSLYGVTQLSSPTSAFARPYTPLSSTTGPSGSGLKDQLFPERPGEPECQYYLRTGDCKFGLACRYHHPRDHIVAPPFLSPIGLPLRPVCMVTNLI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2028 349 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Ssu7g2028 349 SUPERFAMILY CCCH zinc finger 301 324 IPR036855 GO:0046872
Ssu7g2028 349 PANTHER PROTEIN PHOSPHATASE RELATED 1 343 - -
Ssu7g2028 349 MobiDBLite consensus disorder prediction 271 295 - -
Ssu7g2028 349 Gene3D - 127 173 - -
Ssu7g2028 349 MobiDBLite consensus disorder prediction 271 287 - -
Ssu7g2028 349 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Ssu7g2028 349 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Ssu7g2028 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Ssu7g2028 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Ssu7g2028 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Ssu7g2028 349 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Ssu7g2028 349 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Ssu7g2028 349 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32 1 343 - -
Ssu7g2028 349 MobiDBLite consensus disorder prediction 1 26 - -
Ssu7g2028 349 Gene3D - 281 331 - -
Ssu7g2028 349 Gene3D - 48 122 - -
Ssu7g2028 349 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Ssu7g2028 349 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Ssu7g2028 349 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Ssu7g2028 349 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Ssu7g2028 349 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Ssu7g2028 349 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Ssu7g2028 349 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2028 Ssu-Chr7 40311731 40313585 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2028 1 341 C2H2 Transcription Factor Family AT5G18550 51.240 2.95e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g2028 zf-CCCH 7.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2028 - - gmx:100805017 679.863