Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu7g2027 | ATGGACTTGTACGGACGGCCCCCCGCGAGGAATGGATCGAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGCACCGACACTGCTCTCGAAGaGTCGATGTGGCAATTAAGACTGGGTGGCGGACTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTGCCTAATTGTGTGTATTACATGCGAACCGGAGTGTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTTCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTCCGTGTCAGtattatttaaaaactggAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTGCGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTGTATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCCAGACCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTACGGTCCTGTACTTCTTTCCCCGGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGTGCTCAACCTGCTGTTGGGCCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCACTGCCCTCTGGTGCTGGCCCTTCAGGAAGCAGCCTGAAGGAACAATTATTTCCTGAAAGACCTGGCGAACCAGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCAGGATCATATTGTGGCACGGCCACTTCTTAGCCCCGTCGGACTTCCTTTACGTCCGGGGGTACAACCTTGTgcattttatttgcaaaatggGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGCTGGCTCCTTCAACAATATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTGGAAATAGTTCCGGTACTTCTGTGGGTTTAATTTTCTCACAAGGTGTGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTACCCCTCCAAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA | 1425 | 0.4842 | MDLYGRPPARNGSNPVNQPEWRSPGTDTALEESMWQLRLGGGLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRSAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGVSCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGPTSLYGVTQLSSPTSAFARPYTPLPSGAGPSGSSLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPQDHIVARPLLSPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTISSELRPELMSGSKKESFSARIPSGNSSGTSVGLIFSQGVSVSLSDVQLSSQSSTPPSSSRSTRQSGEIR | 474 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu7g2027 | 474 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | MobiDBLite | consensus disorder prediction | 409 | 432 | - | - | |
Ssu7g2027 | 474 | Gene3D | - | 47 | 128 | - | - | |
Ssu7g2027 | 474 | SUPERFAMILY | CCCH zinc finger | 145 | 171 | IPR036855 | GO:0046872 | |
Ssu7g2027 | 474 | MobiDBLite | consensus disorder prediction | 279 | 298 | - | - | |
Ssu7g2027 | 474 | ProSiteProfiles | Zinc finger C3H1-type profile. | 52 | 80 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SUPERFAMILY | CCCH zinc finger | 56 | 80 | IPR036855 | GO:0046872 | |
Ssu7g2027 | 474 | ProSiteProfiles | Zinc finger C3H1-type profile. | 344 | 372 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | ProSiteProfiles | Zinc finger C3H1-type profile. | 143 | 171 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Gene3D | - | 299 | 382 | - | - | |
Ssu7g2027 | 474 | PANTHER | PROTEIN PHOSPHATASE RELATED | 17 | 457 | - | - | |
Ssu7g2027 | 474 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 | 17 | 457 | - | - | |
Ssu7g2027 | 474 | MobiDBLite | consensus disorder prediction | 451 | 474 | - | - | |
Ssu7g2027 | 474 | Gene3D | - | 131 | 177 | - | - | |
Ssu7g2027 | 474 | SUPERFAMILY | CCCH zinc finger | 100 | 125 | IPR036855 | GO:0046872 | |
Ssu7g2027 | 474 | SUPERFAMILY | CCCH zinc finger | 346 | 375 | IPR036855 | GO:0046872 | |
Ssu7g2027 | 474 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Ssu7g2027 | 474 | ProSiteProfiles | Zinc finger C3H1-type profile. | 97 | 125 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SUPERFAMILY | CCCH zinc finger | 305 | 328 | IPR036855 | GO:0046872 | |
Ssu7g2027 | 474 | SMART | c3hfinal6 | 344 | 371 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SMART | c3hfinal6 | 143 | 170 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SMART | c3hfinal6 | 52 | 79 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | SMART | c3hfinal6 | 97 | 124 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 54 | 79 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 346 | 370 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 145 | 170 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 100 | 124 | IPR000571 | GO:0046872 | |
Ssu7g2027 | 474 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 302 | 327 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu7g2027 | Ssu-Chr7 | 40302356 | 40305746 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu7g2027 | 20 | 451 | C2H2 Transcription Factor Family | AT5G18550 | 52.222 | 2.75e-134 | 394 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Ssu7g2027 | zf-CCCH | 1e-08 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu7g2027 | - | - | gmx:100812475 | 862.448 |