Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2027 ATGGACTTGTACGGACGGCCCCCCGCGAGGAATGGATCGAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGCACCGACACTGCTCTCGAAGaGTCGATGTGGCAATTAAGACTGGGTGGCGGACTGGGTGGCGGCGAATCTTACCCGGAGCGACCCGGTGTGCCTAATTGTGTGTATTACATGCGAACCGGAGTGTGTGGATATGGTAGCAGGTGTCGTTACAATCACCCTCGTGATCGTTCTGCGGTTGCTGCAGCAGTAAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTCCGTGTCAGtattatttaaaaactggAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCAAAAAATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTGCGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTGTATCTTGTAAATTCCATCATCCTCAACCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCCTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCCAGACCTCCTATATTGCCTGGTTCATATGTACAAGGGGCTTACGGTCCTGTACTTCTTTCCCCGGGGGTTGTCCAATTTCCTGGATGGAGTCATTATTCGGCACCTGTAAGTCCTGTGCCATCTCCTGGTGCTCAACCTGCTGTTGGGCCTACTTCTTTATATGGAGTGACCCAGTTGTCATCACCAACATCAGCTTTTGCTAGACCATATACTCCACTGCCCTCTGGTGCTGGCCCTTCAGGAAGCAGCCTGAAGGAACAATTATTTCCTGAAAGACCTGGCGAACCAGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATATCATCATCCTCAGGATCATATTGTGGCACGGCCACTTCTTAGCCCCGTCGGACTTCCTTTACGTCCGGGGGTACAACCTTGTgcattttatttgcaaaatggGCATTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGATCTATGAGATACAGTCCATCGGCATCTTCTCTCATTGATGTGCCAGTTACTCCATACCCAGTTGGGTCTTTGCTGTCTCAGCTGGCTCCTTCAACAATATCTTCAGAGCTTCGGCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATACCTTCTGGAAATAGTTCCGGTACTTCTGTGGGTTTAATTTTCTCACAAGGTGTGTCTGTCTCGCTATCTGATGTGCAACTCTCAAGTCAGAGTTCTACCCCTCCAAGCAGTAGCAGAAGCACCAGACAAAGTGGTGAGATACGTTGA 1425 0.4842 MDLYGRPPARNGSNPVNQPEWRSPGTDTALEESMWQLRLGGGLGGGESYPERPGVPNCVYYMRTGVCGYGSRCRYNHPRDRSAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKNGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGVSCKFHHPQPAGTSLPASAPQFYQQVQSPTVPLPEQYGGASTSLRVARPPILPGSYVQGAYGPVLLSPGVVQFPGWSHYSAPVSPVPSPGAQPAVGPTSLYGVTQLSSPTSAFARPYTPLPSGAGPSGSSLKEQLFPERPGEPECQYYLRTGDCKFGLACRYHHPQDHIVARPLLSPVGLPLRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLIDVPVTPYPVGSLLSQLAPSTISSELRPELMSGSKKESFSARIPSGNSSGTSVGLIFSQGVSVSLSDVQLSSQSSTPPSSSRSTRQSGEIR 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2027 474 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Ssu7g2027 474 MobiDBLite consensus disorder prediction 409 432 - -
Ssu7g2027 474 Gene3D - 47 128 - -
Ssu7g2027 474 SUPERFAMILY CCCH zinc finger 145 171 IPR036855 GO:0046872
Ssu7g2027 474 MobiDBLite consensus disorder prediction 279 298 - -
Ssu7g2027 474 ProSiteProfiles Zinc finger C3H1-type profile. 52 80 IPR000571 GO:0046872
Ssu7g2027 474 SUPERFAMILY CCCH zinc finger 56 80 IPR036855 GO:0046872
Ssu7g2027 474 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Ssu7g2027 474 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Ssu7g2027 474 Gene3D - 299 382 - -
Ssu7g2027 474 PANTHER PROTEIN PHOSPHATASE RELATED 17 457 - -
Ssu7g2027 474 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 17 457 - -
Ssu7g2027 474 MobiDBLite consensus disorder prediction 451 474 - -
Ssu7g2027 474 Gene3D - 131 177 - -
Ssu7g2027 474 SUPERFAMILY CCCH zinc finger 100 125 IPR036855 GO:0046872
Ssu7g2027 474 SUPERFAMILY CCCH zinc finger 346 375 IPR036855 GO:0046872
Ssu7g2027 474 MobiDBLite consensus disorder prediction 1 26 - -
Ssu7g2027 474 ProSiteProfiles Zinc finger C3H1-type profile. 97 125 IPR000571 GO:0046872
Ssu7g2027 474 SUPERFAMILY CCCH zinc finger 305 328 IPR036855 GO:0046872
Ssu7g2027 474 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Ssu7g2027 474 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Ssu7g2027 474 SMART c3hfinal6 52 79 IPR000571 GO:0046872
Ssu7g2027 474 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Ssu7g2027 474 SMART c3hfinal6 97 124 IPR000571 GO:0046872
Ssu7g2027 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 54 79 IPR000571 GO:0046872
Ssu7g2027 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 346 370 IPR000571 GO:0046872
Ssu7g2027 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 145 170 IPR000571 GO:0046872
Ssu7g2027 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 124 IPR000571 GO:0046872
Ssu7g2027 474 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2027 Ssu-Chr7 40302356 40305746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2027 20 451 C2H2 Transcription Factor Family AT5G18550 52.222 2.75e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g2027 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2027 - - gmx:100812475 862.448