Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2025 ATGGATGAATTCTATGTAACAGATCCGAATGCTGAAGTTATTGCTTTATCACCAACCACATTAATGGCAACAAATAGATTCGTCTGTGAGATCTGCAACAAAGGGTTTCAGCGGGACCAAAACCTTCAGTTGCACCGCAGAGGAGACCTCACTGGCATAAAAAAACACTACAGCAGAAAACATGgtgaaaagaaatggaaatgtGACAAGTGCTCTAAAAGATATGCAGTCCAGTCTGATTGGAAGGCCCACCAGAAAACCTGTGGCACCAGGGAATACAAATGTGATTGTGGGACCATATTTTCCAGAAGAGACAGTTTTATCACACACAGAGCCTTTTGTGACGCATTAACTGAAGAAAACAACCGAGTGAACCAGGGATTAACGAGTGGCATGACACCAAGCTTGCAACATGAAGTGCCGGACCTTATGGCCACAATGCCTCTAAGCACTAGTTCCAACACTGCTGTACCCGAATTCAGCAACTACGACCCTAAGAGCCCACTCAAAACCCTCTCCCAAGAACTTGACCCAGTGCCATTCAAGTCCATGGGCATGAGTGGTGGCATGTTCTCCTCCACTTCAGGTACACTCTTTGGTGGTCCAAAAAACATGTCTCCCTCCTCTTCTTCCAGCCTTCAACTCAGTTCCAACAACTCCACTGCTTTCAATTACTTCCAAGACAGCAAAAACGCTTCTGCCTCGGCTCACATGTCTGCCACAGCTTTATTACAGAAAGCAGCCCAAATGGGTGCATCTGCAAGCAATAGCAATAACTCTCCCATGATGCAGAAAAGCTTTGTTAGTGGCATGGCTGGTCCTGACCACCATAATTCTTCTTCCTATGACCACTTCCATCCACACCCTGATCAATCTCACATGGCTGGGATTAGTGGTGCTGGAGCCTTCACCAACCAATTTTTTCACAAGGGGCAACAAGAAATGTCACTGATATTTGATGCTAACAACACTACTGGGTCCACAATGAATGACATGGGAATGTTTGGTCCAATGTTCATGGGAAGTGACCACAACCAAGGCTTGATGAAGAACGTGGAACAAGAGCTTGGTGCTAGTTTGAGTTTGATCCATAGAAGAGATGTAGCAGAAGGAAATCCAGTGGGGGGTTCAAGGTTTGGAGGTAGTGACATGACAACGGTTCATGACTTCTTGGGCGTTGGGGGTGCAACTTCGAGGGCAGCGAGTTTGCATGAACCACAACAACAGCAAAGATTGGAGTTAGAAGCATTAACCCATCAGAGGTTGCAAATTATGAATCACTTTCATCACCACCTTCCACATGGGGATTCAGCTATGGAGAAATCCATTTGGGACATTTGA 1341 0.4519 MDEFYVTDPNAEVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMTPSLQHEVPDLMATMPLSTSSNTAVPEFSNYDPKSPLKTLSQELDPVPFKSMGMSGGMFSSTSGTLFGGPKNMSPSSSSSLQLSSNNSTAFNYFQDSKNASASAHMSATALLQKAAQMGASASNSNNSPMMQKSFVSGMAGPDHHNSSSYDHFHPHPDQSHMAGISGAGAFTNQFFHKGQQEMSLIFDANNTTGSTMNDMGMFGPMFMGSDHNQGLMKNVEQELGASLSLIHRRDVAEGNPVGGSRFGGSDMTTVHDFLGVGGATSRAASLHEPQQQQRLELEALTHQRLQIMNHFHHHLPHGDSAMEKSIWDI 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2025 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 55 IPR013087 -
Ssu7g2025 446 Pfam Zinc-finger of C2H2 type 27 48 - -
Ssu7g2025 446 Gene3D Classic Zinc Finger 18 92 - -
Ssu7g2025 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 48 - -
Ssu7g2025 446 SUPERFAMILY beta-beta-alpha zinc fingers 26 87 IPR036236 -
Ssu7g2025 446 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 48 429 - -
Ssu7g2025 446 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 48 429 - -
Ssu7g2025 446 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2025 Ssu-Chr7 40263398 40265598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2025 8 288 IDZ Gene Family AT3G50700 44.412 1.83e-75 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2025 - - gmx:100797943 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2025 7 40263398 40265598 Ssu7g2025 7 40263398 40265598 ECH