Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2023 ATGGGTGACAAGATAGGCAAAGTCTCAGACAGAGAAGGCTTTAAGTACAACTTCGCAACTGCAAGTGACACCTCTGCACAAGATGGGGTCGTTAAAGAGCAAGATCGGTTGCTTCCAATAGCTAATGTGGGGCGCATCATGAAGCAAATCCTTCCTCCTAACGCCAAAATCTCAAAGGAAGCTAAGGAAACCATGCAAGAATGTGTGTCCGAGTTCATTAGCTTTGTCACCGGGGAAGCTTCTGACAAGTGTCACAAGGAGAAGCGCAAGACTGTGAATGGCGACGATATTGGCTGGGCCTTGGCTGCCCTAGGGTTTGATGACTACGCTGAGCCACTTAAAAGGTACTTGCATAAGTATAGGGAGTTGGAGGGGGAGAGAGCAAATCAAAATAAGGCTAACAACAGTTATGAAAACAACATTGATAACATATAA 435 0.4552 MGDKIGKVSDREGFKYNFATASDTSAQDGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDIGWALAALGFDDYAEPLKRYLHKYRELEGERANQNKANNSYENNIDNI 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2023 144 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 37 101 IPR003958 -
Ssu7g2023 144 MobiDBLite consensus disorder prediction 125 144 - -
Ssu7g2023 144 PRINTS CCAAT-binding transcription factor subunit A signature 65 83 - -
Ssu7g2023 144 PRINTS CCAAT-binding transcription factor subunit A signature 103 121 - -
Ssu7g2023 144 PRINTS CCAAT-binding transcription factor subunit A signature 84 102 - -
Ssu7g2023 144 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-5 15 140 - -
Ssu7g2023 144 SUPERFAMILY Histone-fold 34 140 IPR009072 GO:0046982
Ssu7g2023 144 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu7g2023 144 Gene3D Histone, subunit A 25 143 IPR009072 GO:0046982
Ssu7g2023 144 MobiDBLite consensus disorder prediction 129 144 - -
Ssu7g2023 144 Coils Coil 113 144 - -
Ssu7g2023 144 ProSitePatterns NF-YB/HAP3 subunit signature. 68 84 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2023 Ssu-Chr7 40231153 40231587 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2023 30 131 CCAAT-HAP3 Transcription Factor Family AT2G47810 84.314 2.08e-61 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu7g2023 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2023 K08065 - gmx:100796514 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2023 7 40231153 40231587 Ssu7g2023 7 40231153 40231587 ECH