Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2017 ATGTTACCTGATGAGGCTCCTTCTGAAGGCGAGGCTTTGGTGCCCCCACAGTGTgtagGTGAAGCTGCGGAGAAATCGAAGGTGGCTGGTGCAGGTCGGTTGAAGAAACGTCCTGCGATATCGAGTCCCCAGACTGCGTGGGGAAAGCTCCTCTCTCAGTGTTCGCAGAATCCTCACGTGTTCATGAGTGAACCTATCTTCACTGTTGGTCAAGGTCAACATTGTAATTTAGGGCTTAAAGATCCCACTATTGGTAGTGTTTTGTGCAAGTTGAGCCACATAGAGTGTGGAGGTTCATCTGGTGCATTACTGGAAATCACAGGGAGCAAAGGTTCTATTCACATTAATGGGAAGACTTATAGAAAGAATGCCCGACTGATTTTAAACGGAGGTGATGAGGTTGTCTTTGGTTCGTCTGCCAAGTATGCTTATATCTTTCAGCAGCTGacgaataataatattagtgcTGCTGATATACCTTCTTCTGTGAGTATTTTGGAAGCCCAAAGTGCTCCAATAAATGGAATCCAAGTTGAAGTCAGATCTGGAGACCCTTCTGCTGTTGCTGGAGCATCTATATTGGCCTCTTTACCTAATATTCGTAAAGAATTATCTCTCCTTCCACCTGCTGCTAAAACTGGCAAGAATGTGCAACAGAACACTGACATTTCATCACTACCTTCTGGCATCGGGGATGATATCccagaaaatgaaatgaaggaTACCACCAATAATGACGAACCAGCTGGAGATTTTTCTGCTGAGAAAACTGTTCTCCCATCCTCTACCACTGTCAACAAAAATCCTAGCCTTGACTCGGCAGAAGTTGATACCAATATTGATGCAGATGTTGGGAAGATGACTGCTGCTACATATGATTTGGGGCCATTACTGCACATGCTTACTGGCTCTTGTCCTGAATTTGATTTAAGTAGTAGCATTTCCAAGATATTGGAAAAGCAAAGGGGATTAAGAGAACTCCTTAAAGATGTTGATACCCCGACAATATTGGCATCAACCAAGCGGCAAGCATTTAAGGACAGTTTACAACAGAGAATTCTCAAAGCTGAGAATATTGATGTCTCATTTGAAACTTTCCCATATTATCTAAGTGATACAACAAAGAACGTTTTGATTGCTTCTACATTTATTCATTTGAAGTGCAATGGTTTTGGAAAATATGCTTCAGACCTTCCATCAGTGTCACCACGAATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCACTTGTGAAGCATTTTGGTGCCAGCCTACTAATTGTGGATTCTCTTTCCCTGCCTGGTGGATCACCGTCAAAGGAAGTTGATTCTGCCAAAGAAAGTTCTAGGCCTGAAAAACCATCTGTGTTTGCTAAGAGAAATGCCCAGATTGCCGCATTACTGCATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATAGGTGGATCCACACTAAGTTCTCAGGCTGTGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCGCTACTCTTAAAAAGGGTGATCGAGTAAAATTTATTGGTAGCTTTCCTTCTGCTGTCTCATCACTACCAAATTATATTTCAAGGGGACCAAGCTATGGCTTCCGGGGCAAAGTTCTCCTGGCTTTTGAAGATAATGGATCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGTGGGCTTTGCGAAGATGATCGTGGGTTCTTCTGTTCCGCAAATCATTTACTACGGGTAGATGTCTCTGGAGGGGATGACCTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGCCTCTAATCAGAGTAAAATTGGTGCCCTCGTGTTGTTCTTGAAAGATATAGAGAAGACAATGGTTGGCAACTcggaaattttaaaaagtaaatttgaaaGCTTGCCACCAAATGTTGTGGTAATTGGTTCTCACACCCAGTTGGATAATCGTAAGGAGAAGACTCAAGCTGGCGGCCTTCTGTTTACCAAGTTTGGAAGCAATCAGACAGCACTACTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCTAAAGTCATGAAGCAACTTAATCGCCTTTTTCCAAACAAAGTGACAATACAGTTGCCTCAGGATGAGGCTTTACTTTCTGAGTGGAAGCAGCAGTTAGATCGTGACATTGAAACTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGCATAGTTCTCAAcagaattggattggattgccCTGACCTTGAGACTCTTTGCATCAAAGACCACACCCTAACGACTGAGAGTGTGGAGAAGATCATTGGATGGGctataagttaccattttatGCATTCATCTGAAGCTTCTACGAGAGATTCTAAGCTTGTAATATATGCAGAAAGCATTAAGTATGGACTTAACATTCTACAGGGCATACAAAATGAGAACAAGAATGTGAAAAAATCACTTAAGGATGTGGTTACTGAGaatgaatttgagaaaaaactacTTGCTGACGTTATTCCACCAACTGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTAGCAAAGGACAGCTGGCAAAGCCTTGCAAGGGAATTTTGCTTTTTGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGtgcaaattttattaacatttcaaTGTCCAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCAagcaaaattgctccaagtgtAATTTTTGTTGATGAGGTTGATAGTATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAATTCATGGTTAATTGGGATGGTTTGCGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCACGAAGattgaTGATCAATTTGCCAGATGCtccaaatagagaaaaaattgtCAGGGTTATTTTAGCAAAAGAAGATTTGGCACGTGATGTTGATTTTGAAGCAATAGCAAATGTGACTGATGGATATTCAGGGAGTGACCTAAAGAATCTCTGTGTCACAGCAGCTCACTGCCCAATAAGAGAGATCTTGGAGAGGGAAAAGAAGGAGAGATACTTGGCATTGGCTCAGAACCAACCTTTAACTGGGTTGTGTAGCAGTATTGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCagGTTTGTGCTAGTGTGTCTTCGGAGTCAACAAATATGAATGAACTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCGAGAAAAATGAGATCTTTGAGCTATTTCATGTAA 3498 0.3985 MLPDEAPSEGEALVPPQCVGEAAEKSKVAGAGRLKKRPAISSPQTAWGKLLSQCSQNPHVFMSEPIFTVGQGQHCNLGLKDPTIGSVLCKLSHIECGGSSGALLEITGSKGSIHINGKTYRKNARLILNGGDEVVFGSSAKYAYIFQQLTNNNISAADIPSSVSILEAQSAPINGIQVEVRSGDPSAVAGASILASLPNIRKELSLLPPAAKTGKNVQQNTDISSLPSGIGDDIPENEMKDTTNNDEPAGDFSAEKTVLPSSTTVNKNPSLDSAEVDTNIDADVGKMTAATYDLGPLLHMLTGSCPEFDLSSSISKILEKQRGLRELLKDVDTPTILASTKRQAFKDSLQQRILKAENIDVSFETFPYYLSDTTKNVLIASTFIHLKCNGFGKYASDLPSVSPRILLSGPAGSEIYQETLSKALVKHFGASLLIVDSLSLPGGSPSKEVDSAKESSRPEKPSVFAKRNAQIAALLHKKPASSVDAEIIGGSTLSSQAVLKQEVSTASSKGATLKKGDRVKFIGSFPSAVSSLPNYISRGPSYGFRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDVSGGDDLDKVAINEIFEVASNQSKIGALVLFLKDIEKTMVGNSEILKSKFESLPPNVVVIGSHTQLDNRKEKTQAGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLNRLFPNKVTIQLPQDEALLSEWKQQLDRDIETMKAQSNVVSIRIVLNRIGLDCPDLETLCIKDHTLTTESVEKIIGWAISYHFMHSSEASTRDSKLVIYAESIKYGLNILQGIQNENKNVKKSLKDVVTENEFEKKLLADVIPPTDIGVTFDDIGALENVKDTLKELVMLPLQRPELFSKGQLAKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRLMINLPDAPNREKIVRVILAKEDLARDVDFEAIANVTDGYSGSDLKNLCVTAAHCPIREILEREKKERYLALAQNQPLTGLCSSIDIRPLKMEDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2017 1165 Coils Coil 821 841 - -
Ssu7g2017 1165 Gene3D - 45 154 - -
Ssu7g2017 1165 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 860 1139 IPR027417 -
Ssu7g2017 1165 Gene3D - 1033 1127 - -
Ssu7g2017 1165 MobiDBLite consensus disorder prediction 443 462 - -
Ssu7g2017 1165 Gene3D - 859 1139 IPR027417 -
Ssu7g2017 1165 MobiDBLite consensus disorder prediction 212 227 - -
Ssu7g2017 1165 SUPERFAMILY SMAD/FHA domain 47 144 IPR008984 GO:0005515
Ssu7g2017 1165 Pfam ATPase family associated with various cellular activities (AAA) 901 1030 IPR003959 GO:0005524|GO:0016887
Ssu7g2017 1165 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 6 1165 - -
Ssu7g2017 1165 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 6 1165 - -
Ssu7g2017 1165 ProSitePatterns AAA-protein family signature. 1004 1023 IPR003960 GO:0005524|GO:0016887
Ssu7g2017 1165 CDD AAA 899 1032 - -
Ssu7g2017 1165 Pfam AAA+ lid domain 1054 1089 IPR041569 -
Ssu7g2017 1165 SMART AAA_5 897 1034 IPR003593 -
Ssu7g2017 1165 MobiDBLite consensus disorder prediction 211 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2017 Ssu-Chr7 40062936 40075960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2017 860 1104 Calmodulin-binding Proteins AT3G56690 38.095 3.21e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2017 - - gmx:100800938 2011.5