Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2011 ATGAAGTTCTGCAAGACCTACCAGCAGTACATGCAAGGTCAGGGGCAGAAGCTCCCTGGCGTTGGCTTCAAGAAGCtcaaaaaaatcatgaaaaggTGCAGGAGAGCCTCCAAACCCCTTAATCATCCCACCTGCCCTGATCATTGCCCAgTGTGCGATGGGACCTTTTTCCCTTCCCTTCTCAATGAAATGTCAGATATAGTAGGCTGCTTTAACCAGCGCGCGCAGGAATTGCTGGATCAACATCTTGCTTCTGGCTTCAGAAAGTACTTTCTCATGTTGAAAGGAAAATTACAGGGGAATCATACTGCTCTAATCGAAGAAGGCAAAGATCTAGTCATATATGCACTCATAAATGCCATCGCAATTCGAAAAATATTGAAGAAATATGATAAGATTCATTATTCTAAGCAAGGCCAATTATTCAAGTCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAGCTTATTGCCTTACACATTAACTTAAGGGAAACGAAAGCCAAGTCAAGGGAGGCACCTGCACTCTTCGATGGATGTTATCTCACATTCAAGGATGGAAAACCATCACTTTCTTGTGAGCTCTTTGATTCCATCAAAATTGATATTGACTTGACTTGCTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTACACCTGTGCTTGCTCAGCTGCATCAGTAACTATTGTCGATGGGCTGAAGGCAGCGAATCCTAAAGAAAAATGTCCTCTATGCCGAGAGGGAAGAGTTTACGAAGATGCTGTGCACTTGGAAGAATTAAATATTCTGCTAGGCCGAAGCTGCAAGGAGTACTGGGAGCAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAAGCAAGTGAAGGAGCATTGGGAAACGCAGTGTAGAGTGTTCATGggcatctaa 954 0.4287 MKFCKTYQQYMQGQGQKLPGVGFKKLKKIMKRCRRASKPLNHPTCPDHCPVCDGTFFPSLLNEMSDIVGCFNQRAQELLDQHLASGFRKYFLMLKGKLQGNHTALIEEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLIELIALHINLRETKAKSREAPALFDGCYLTFKDGKPSLSCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSAASVTIVDGLKAANPKEKCPLCREGRVYEDAVHLEELNILLGRSCKEYWEQRLQMERVERVKQVKEHWETQCRVFMGI 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2011 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 IPR033326 -
Ssu7g2011 317 Pfam Zinc finger, C3HC4 type (RING finger) 210 263 - -
Ssu7g2011 317 ProSiteProfiles Zinc finger RING-type profile. 213 262 IPR001841 -
Ssu7g2011 317 SMART ring_2 213 261 IPR001841 -
Ssu7g2011 317 ProSitePatterns Zinc finger RING-type signature. 228 237 IPR017907 -
Ssu7g2011 317 SUPERFAMILY RING/U-box 206 265 - -
Ssu7g2011 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 315 IPR013083 -
Ssu7g2011 317 CDD SPX_BAH1-like 2 140 - -
Ssu7g2011 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 317 - -
Ssu7g2011 317 ProSiteProfiles SPX domain profile. 1 144 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2011 Ssu-Chr7 39921118 39923872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2011 210 262 C3H Transcription Factor Family AT4G28270 41.379 5.28e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2011 K16275 - gmx:100803060 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2011 7 39921118 39923872 Ssu7g2011 7 39921118 39923872 ECH
Ssu7g2011 7 39921118 39923872 Ssu4g0652 4 10297744 10300419 PCT