Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1999 ATGAGCGGAGCGAAGGGGAAGAAGAAGGGAGCGAGCTTCGTGATCGATTGCGCGAAGCCGGTGGAGGATAAGATCATGGACATTGCTTCCCTCGAGAAGTTCCTTCAGGAGAGGATTAAGGTCGGCGGCAAGGCCGGTGCTCTTGGTGATTCCGTTACCGTCACTCGGGACAAGAGCAAGATCACTGTCACCTCTGATAGCAACTTCTCTAAACGCTATCTGAAATACTTAACCAAGAAGTACTTGAAAAGCACAATGTGA 261 0.5019 MSGAKGKKKGASFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTRDKSKITVTSDSNFSKRYLKYLTKKYLKSTM 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1999 86 PANTHER 60S RIBOSOMAL PROTEIN L22 2 84 IPR002671 GO:0003735|GO:0005840|GO:0006412
Ssu7g1999 86 Gene3D - 1 86 IPR038526 -
Ssu7g1999 86 PANTHER 60S RIBOSOMAL PROTEIN L22-2 2 84 - -
Ssu7g1999 86 Pfam Ribosomal L22e protein family 9 84 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1999 Ssu-Chr7 39715128 39716601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1999 4 76 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 86.301 1.71e-37 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1999 K02891 - gmx:100305544 131.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1999 7 39715128 39716601 Ssu7g1999 7 39715128 39716601 ECH