Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1990 ATGGATCCAGACGCTCAAGCAAAGTATGCCAGCAATGGCAAGATCATGTTTGGCTCTACCATCCTACTCTTCCTCATAGTAATCATCGTCGTTATCCTTCACACCTTCCGCCACTCGTGCTTCCatcgccaccgccaccaccaccaccaccaccaccgcgcTACTCGAATAGATTCCTCCGTCCCGTTTAACGAGGGCCTCCGCCCATCCGTTCTCAAATTCCTTCCCACATTCACTTACTCCTCCGACACCCACCGCCATCTCCACGACTGCGCCGTCTGCTTGTCGGAGTTCGCCCACGGCGAAGAAGGCCGCTTCCTTCCGAATTGTAACCACGCTTTCCACTCCCATTGCGTCGATACTTGGTTCCGCTCTCACTCTAACTGTCCACTTTGCCGAACCCCGGTTCACCGACACGCCGCACCGGTCCAACCTCCTCGAACCGCGTCCTCTGAGATTGAACCGGGTCCGGCgggtttctcttcttttcctgcACCGATTGGGTGCCCGAGGAAGCCGTTGGAACTGATAAGCATAATAGTGGAATCGGAGTCGGGTCGTGGAGTCAGGATCTCACGGGTTGAGAATTGA 591 0.4975 MDPDAQAKYASNGKIMFGSTILLFLIVIIVVILHTFRHSCFHRHRHHHHHHHRATRIDSSVPFNEGLRPSVLKFLPTFTYSSDTHRHLHDCAVCLSEFAHGEEGRFLPNCNHAFHSHCVDTWFRSHSNCPLCRTPVHRHAAPVQPPRTASSEIEPGPAGFSSFPAPIGCPRKPLELISIIVESESGRGVRISRVEN 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1990 196 Pfam Ring finger domain 90 133 IPR001841 -
Ssu7g1990 196 SUPERFAMILY RING/U-box 76 140 - -
Ssu7g1990 196 PANTHER RING-H2 FINGER PROTEIN ATL64 6 153 - -
Ssu7g1990 196 CDD RING-H2_EL5_like 90 133 - -
Ssu7g1990 196 SMART ring_2 91 132 IPR001841 -
Ssu7g1990 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 141 IPR013083 -
Ssu7g1990 196 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 6 153 - -
Ssu7g1990 196 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1990 Ssu-Chr7 39567122 39567712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1990 9 141 Rapid Response to Elicitors AT3G16720 43.836 1.36e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1990 - - gmx:102669188 254.603