Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1988 atggccaacaAGTTACGTAATGCCCTCCCAACAACATCAACCTTTCTCATCCTCATCCTACCCTCATTATTCGCCTCTCTAGCTTCGGCAGACATCCTTCCCACCACCTCTGTCTCTCCGGGAACCATATGCAAATCCACCCCCGACCCATCCTATTGCAATTCCGTGTTCCCTCCCCAAAACGGCAACGTCTACTACTATGGCCGGTTCTCGGTCAGAAAGTCCCTATCACAAGCCACCAATTTCTTGAACTTAGTAAACAAGTATCTCCAACGCCGCTCCTCTCTTTCCACCTCCGCAATCCACGCGCTCGAAGATTGCCAAACCCTTGGCGAGCTCAACGTAGATTTTCTTTCCAGTTCCTTCCAAACCGTGAACAAAACAACCAGGCTCCTACCCATTTCACAAGCTGACGACATCCAAACCCTTCTCAGTGCCATTCTAACCAACCAACAAACCTGCCTGGAAGGCCTTCAAGCCACCGCCTCCGCTTGGAGCGTGAAAAACGGACTCTCCGCTCCGCTCTCCAACGACACCAAGCTCTACAGTGTATCTCTGGCGCTGTTCACAAAGGGGTGGGTTCCCGACGCCAATTTCACCACCGCGTTTCAGCCAATCCCGAAACAGCTCGGTTTTCGAAACGGGCGTTTGCCTCTCAAGATGTCGAGCGGAACGCGCGCGATCTACGAGTCGGTGAGTCGGAGAAAGCTCCTTCAGGCGACGGTGGGTGACGAGGTTAAGGTGAGAGACATCGTGACAGTGAGCAAAGATGGAAGCGGAAACTTCACCACCATCAACGACGCCATCGCCGCCGCGCCGAATAAGACCTCCTCGACGGCGGGGTACTTCCTGATCTACGTCACCGCCGGTGTTTACGAGGAAAACGTGTCCATCGATAAGAAAAAGACGTACCTGCTGATGGTTGGGGATGGCATCAACAAGACAATTATTACCGGGAATCGCAGTGTTGTTGATGGCTGGACAACCTTCAAGTCAGCAACCTTTGTCACTAACTTCTTGCTTGGAGATAACTGGCTGCCCCGGACCGGAGTGGCTTACGCCAGTAACTTGTTATAG 1077 0.5227 MANKLRNALPTTSTFLILILPSLFASLASADILPTTSVSPGTICKSTPDPSYCNSVFPPQNGNVYYYGRFSVRKSLSQATNFLNLVNKYLQRRSSLSTSAIHALEDCQTLGELNVDFLSSSFQTVNKTTRLLPISQADDIQTLLSAILTNQQTCLEGLQATASAWSVKNGLSAPLSNDTKLYSVSLALFTKGWVPDANFTTAFQPIPKQLGFRNGRLPLKMSSGTRAIYESVSRRKLLQATVGDEVKVRDIVTVSKDGSGNFTTINDAIAAAPNKTSSTAGYFLIYVTAGVYEENVSIDKKKTYLLMVGDGINKTIITGNRSVVDGWTTFKSATFVTNFLLGDNWLPRTGVAYASNLL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1988 358 Pfam Pectinesterase 252 337 IPR000070 GO:0030599|GO:0042545
Ssu7g1988 358 TIGRFAM PME_inhib: pectinesterase inhibitor domain 16 190 IPR006501 GO:0004857
Ssu7g1988 358 SMART PMEI_2 35 188 IPR006501 GO:0004857
Ssu7g1988 358 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Ssu7g1988 358 Gene3D - 245 345 IPR012334 -
Ssu7g1988 358 Pfam Plant invertase/pectin methylesterase inhibitor 42 188 IPR006501 GO:0004857
Ssu7g1988 358 PANTHER PECTINESTERASE 23 335 - -
Ssu7g1988 358 SUPERFAMILY Pectin lyase-like 250 337 IPR011050 -
Ssu7g1988 358 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Ssu7g1988 358 CDD PMEI-like_3 42 193 - -
Ssu7g1988 358 PANTHER PECTINESTERASE 23 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1988 Ssu-Chr7 39558404 39560874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1988 16 335 Carbohydrate Esterase AT4G02330 56.342 2.36e-118 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1988 K01051 - gmx:100790729 545.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1988 7 39558404 39560874 Ssu7g1988 7 39558404 39560874 ECH