Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1987 ATGGCTCTCAAGTACTTCTCCATCCTTACATTCTCCATTTCCTATCTGCTTTCCTTCTTGGTTTTAGCATCATTGTCCATAGCAGATACCGGTTCACCCTCCATCGTCCCACCCGAAACCATTTGCGGGTCCACCGTAGACCCTACTTATTGCAAAACCGAGCTTGCTAATCAAAATGGCAACGTCTTCGACTATGGTCGCATTTCTTTCCGGAAGTCCATGTCCCAGGCCCGTAAATTCTTGAATTTAGTGGACTCATATCTTCAAGGTAGCTCGTCTTTGTCTCAATACACAATTGGCGCTCTTCAAGATTGTCGATTCCTTGCTGGACAAAGTTTAGGTTACTTATCAAACGTCTACGCCACTGCTAACCAAGCTAGCGGTGTTCTTCCCACTTCTCAAGCTGAAGATTTTGAAACCTATCTCAGTGCCGTTTTGACTAACCAACAGACATGTTTAGATGGCCTACAGAGTACCCCAGATGCAAGAGTGAAGAACAACCTATCGTCGTCGCTCTCGGATGACTCGAAGCTTCACAGTGTCACGCTGGCTTTGTTCCTAAAGGGTTGGGTGCCCGCGAAGAAAATCATGACATCATGGCCACAAAATGGGAGACACTTGAATTTCAAAAACGGTCGTTTACCGTTGAAGATGTCAGACCGAGTGCGTGCTATTTATGATTCTGCCAGACACCATGGGAGAAAACTACTCCAAACAGTCAATAAAGACCAAAGCGTTGTGGTAAGTGACATTGTTGTTGTTAGTCAGGATGGAAGTGGAAACTTCACCACTATCAATGATGCAATAGCTGCCGCACCAAATAACTCAGCTGCTAGTGATGGCTACTTCCTTATTTTTATCACCGGGGGGGTGTATCAAGAGTATGTGTCCATTAACAAAACCAAGACGTATTTGATGCTAGTTGGAGATGGAATCAATCAGACAATTATCACTGGCAATCACAGTGTCGGGGATAATTTTACAACATTCAACTCAGCAACAGTAGGTAAGCAAATATAA 1020 0.4422 MALKYFSILTFSISYLLSFLVLASLSIADTGSPSIVPPETICGSTVDPTYCKTELANQNGNVFDYGRISFRKSMSQARKFLNLVDSYLQGSSSLSQYTIGALQDCRFLAGQSLGYLSNVYATANQASGVLPTSQAEDFETYLSAVLTNQQTCLDGLQSTPDARVKNNLSSSLSDDSKLHSVTLALFLKGWVPAKKIMTSWPQNGRHLNFKNGRLPLKMSDRVRAIYDSARHHGRKLLQTVNKDQSVVVSDIVVVSQDGSGNFTTINDAIAAAPNNSAASDGYFLIFITGGVYQEYVSINKTKTYLMLVGDGINQTIITGNHSVGDNFTTFNSATVGKQI 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1987 339 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 19 335 - -
Ssu7g1987 339 SMART PMEI_2 33 185 IPR006501 GO:0004857
Ssu7g1987 339 PANTHER PECTINESTERASE 19 335 - -
Ssu7g1987 339 Pfam Pectinesterase 252 336 IPR000070 GO:0030599|GO:0042545
Ssu7g1987 339 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 188 IPR035513 -
Ssu7g1987 339 SUPERFAMILY Pectin lyase-like 247 335 IPR011050 -
Ssu7g1987 339 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 186 IPR035513 -
Ssu7g1987 339 CDD PMEI-like_3 40 190 - -
Ssu7g1987 339 Gene3D - 245 338 IPR012334 -
Ssu7g1987 339 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 186 IPR006501 GO:0004857
Ssu7g1987 339 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1987 Ssu-Chr7 39544534 39545553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1987 17 334 Carbohydrate Esterase AT1G02810 46.647 2.50e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1987 K01051 - gmx:100813051 405.986