Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1986 ATGAACAACCTCACCCTTGCATCCATTCTGACCGTGATTCTCGCGCTACTCTTATTGGGAACTCACTCCACTCTCACCCCAACAAGAGTCCCAGAAAAACACCTCCATTTCCAGAAGCACATACAAGTAGCCCAATCCACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCAACCCTGGCCACATTCCCAGATCTTGCCACAAAATCTGTCCCACAAGTGATATCCTCAGTTGTCAACCATACCATGTACGAGGTAAGATCATCATCCTACAACTGCAGCGGCCTCAAAAAGAAGCTCAGAAATCTCAACCCACTTGATCAGAGGGCTCTCGATGACTGTCTCAAACTGTTTGATGACACCACTGTGGAGCTCAGAACCACCATCGACGATCTCTCCAAGAGCACCATAGGGTCCAAGAGGCACCATGACTTGCAGACACTGCTGAGCGGAGCAATGACCAACTTGTACACGTGCCTCGATGGCTTTGCTTACAGCAAAGGGAAAGTGAGAGACAGAATCGAGGAGAAGTTGCTTGAGATATCACATCACGTAAGCAACTCGTTGGCCATGCTGAAGAAAGTGCCTGGAGTGAAGAAAACAACGTCAAAATCTGAGGTGTTCCCCGAATATGGAAAGATGAAAAAGGGCTTCCCCTCGTGGTTGTCCTCCAAAGAACGAAAGCTTCTCCAAGCTTCTGTGAATGAGACCAAGTTCGATCTTGTCGTTGCCAAAGATGGCACTGGCAATTTCACCACTATAGGGGAAGCACTTGCTGTGGCTCCCAACTCCAGCACAACAAGGTTTGTGATACACATAAAGGCGGGGGCATACTTCGAGAATGTGGAAGTGATCAGGAAGAAGACCAATCTGATGTTTGTTGGAGACGGGATTGGAAAGACAGTAGTGAAAGCCAGTAGGAATGTTGTGGACGGGTGGACAACTTTTCAATCAGCTACTGTTGCTGTTGTAGGAGCGGGATTCATGGCGAAGGGTATAACCTTTGAGAACTCAGCAGGTCCTGACAAACACCAAGCTGTGGCGTTGAGAAGTGGTGCTGACTTCTCGGCCTTTTACCAATGTAGTTTTGTTGGCTACCAAGACACTCTCTACGTCCATTCCCTACGTCAATTTTATCGTGAATGTGACATTTATGGCACTGTAGACTTCATTTTCGGCAATGCAGCTGTGGTATTCCAAAACTGCAACTTATACGCACGCAAGCCAAACGAAAATCAGAAGAACTTGTTCACTGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTGCAGATTTAATTCCTGTCAAATCCTCGTTCAAGAGCTACCTAGGTCGTCCTTGGAAACTGTATTCAAGGACTGTTTATCTAAAATCTTACATGGAGGATCTGATTGACCCAGCAGGGTGGTTGGAATGGAATGACACATTTGCATTGGATACACTGTATTATGGGGAGTACACGAATAGGGGTCCAGGTTCAAACACAAGTGCTAGAGTTACGTGGCCAGGTTATAGGGTCATTAACAGCTCCACTGAAGCAGCCCAATTCACAGTTGAGCAGTTTATTCAAGGCAATGATTGGTTGAACACCACCGGGATTCCATTCTTCTCTGGTTTGAGTTGA 1662 0.4681 MNNLTLASILTVILALLLLGTHSTLTPTRVPEKHLHFQKHIQVAQSTCQGTLYPDLCVSTLATFPDLATKSVPQVISSVVNHTMYEVRSSSYNCSGLKKKLRNLNPLDQRALDDCLKLFDDTTVELRTTIDDLSKSTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGKVRDRIEEKLLEISHHVSNSLAMLKKVPGVKKTTSKSEVFPEYGKMKKGFPSWLSSKERKLLQASVNETKFDLVVAKDGTGNFTTIGEALAVAPNSSTTRFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGAGFMAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKLYSRTVYLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYTNRGPGSNTSARVTWPGYRVINSSTEAAQFTVEQFIQGNDWLNTTGIPFFSGLS 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1986 553 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Ssu7g1986 553 CDD PMEI-like_3 46 198 - -
Ssu7g1986 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 42 198 IPR035513 -
Ssu7g1986 553 PANTHER PECTINESTERASE 8 549 - -
Ssu7g1986 553 SUPERFAMILY Pectin lyase-like 239 551 IPR011050 -
Ssu7g1986 553 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 195 IPR006501 GO:0004857
Ssu7g1986 553 ProSitePatterns Pectinesterase signature 2. 385 394 IPR033131 -
Ssu7g1986 553 PANTHER PECTINESTERASE 8 549 - -
Ssu7g1986 553 Pfam Pectinesterase 241 538 IPR000070 GO:0030599|GO:0042545
Ssu7g1986 553 SMART PMEI_2 39 192 IPR006501 GO:0004857
Ssu7g1986 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 196 IPR035513 -
Ssu7g1986 553 Gene3D - 235 552 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1986 Ssu-Chr7 39515797 39524552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1986 68 548 Carbohydrate Esterase AT4G02320 56.478 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1986 K01051 - gmx:100802881 993.416
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1986 7 39515797 39524552 Ssu7g1986 7 39515797 39524552 ECH
Ssu4g0629 4 9971016 9975532 Ssu7g1986 7 39515797 39524552 PCT