Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1981 ATGTGTGGCGGTGCCATCATCGCTGACTTCATTCCCCGCCGCGGAGGCCGTCGCCTCACCGCCTCCGAGCTCTGGCCGAAATTCGGCAAGGACGATGACTTCGACTTCGATTGCTCTCATATGGGTAATCAACAACCCTCCACTCTCAAAAGGTCCCAATCTCCCAAAGCTAGCGAGCAAGTCGAGAAGCCGGTGAAAAGGCAGAGGAAGAATCTCTACAGAGGGATTCGGCAGCGTCCGTGGGGAAAATGGGCCGCGGAGATTCGCGATCCGAGAAAAGGGGTTCGTGTCTGGCTGGGTACCTTCAACACTGCTGAGGAAGCTGCGAGAGCCTATGACCGTGAAGCTCGAAAAATCCGCGGAAAAAAAGCCAAGGTGAATTTCCCCAATGAAGACGACGAATATTCCATTCAAGCTCGCAATAATCCACTTCCACCCGTTCCTTTCCGACCCCAAAACCCTCCTCTGTATCAGCAACAGTACCGCTGCGATCTCAATAATGCCCCTAAGAGCCTCAACTTCGAGTTCGGTTACGATCTGAACCACGCTGGGGCGTTTCCTTCCCACAACGCTGACTCGGTCGTTGTTTCCGGTGATGAAAATTCAGGGTTAGCCTCGGGTTCGGAGGGTACTTATTCGACGACGGAGTTCGTGGGGCCCTGTCAGAACGGGACCGGTTTTTTGGGCGGTGCGGTAATGGCGAAGGAGGAAGAGGCAGAGGCAGAGGCGATTGAAGTTCAAGAGGAAAAGAACAAAGTGCAGGAGCTTTCCGAGGAACTCATGGCGTACGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGACAGTCGACACCACCGAATAATGTTCAGGAAAGCGTGGTTGGGGATCTCTGGAGTTTCGATTAA 894 0.528 MCGGAIIADFIPRRGGRRLTASELWPKFGKDDDFDFDCSHMGNQQPSTLKRSQSPKASEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNNPLPPVPFRPQNPPLYQQQYRCDLNNAPKSLNFEFGYDLNHAGAFPSHNADSVVVSGDENSGLASGSEGTYSTTEFVGPCQNGTGFLGGAVMAKEEEAEAEAIEVQEEKNKVQELSEELMAYENYMKFYQIPYYDGQSTPPNNVQESVVGDLWSFD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1981 297 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Ssu7g1981 297 MobiDBLite consensus disorder prediction 40 55 - -
Ssu7g1981 297 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Ssu7g1981 297 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 Coils Coil 232 266 - -
Ssu7g1981 297 MobiDBLite consensus disorder prediction 40 67 - -
Ssu7g1981 297 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 PANTHER DNA-BINDING DOMAIN 1 275 IPR044808 GO:0003700|GO:0009873
Ssu7g1981 297 Pfam AP2 domain 73 121 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Ssu7g1981 297 PANTHER EREBP TRANSCRIPTION FACTOR 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1981 Ssu-Chr7 39459185 39460151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1981 1 130 AP2-EREBP Transcription Factor Family AT3G16770 55.147 5.71e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g1981 AP2 8.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1981 K09286 - gmx:100780763 495.352
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1981 7 39459185 39460151 Ssu7g1981 7 39459185 39460151 ECH