Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1980 ATGGTGTCGTTGAAGCTTCAGAAGCGGCTGGCCGCTAGCGTACTAAAGTGCGGCAGGGGCAAGGTCTGGCTCGATCCTAATGAAGTTAATGAAATCTCCATGGCCAATTCTCGACAAAACATAAGGAAGTTGGTTAAGGATGGGTTTATTATCAGGAAGCCAACTAAGATTCACTCTCGCTCTCGTGCTCGTCGAATGAAGGAGGCCAAGAGGAAGGGACGACACTCTGGTTATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTAAGACGCTTGCTTCGCAAGTACCGGGAATCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAAGTGAAAGGTAATGTTTTCAAGAACAAGAGAGTCCTAATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACCTTGTCTGACCAGTTTGAGGCGAAGCGGGCAAAGAACAAGGCTAGCAGGGAGAGGAAAATTGCTCGGAGGGAGGAGCGCTTGGCTCAAGGTCCGGGAGAGAAGCCATCAGCAGCACCAACTGCTACACCTGCAACAGCATCCCAGCCAGCTCAAGCACCGAAGAAATCCAAGAAGTGA 639 0.4961 MVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSAAPTATPATASQPAQAPKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1980 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Ssu7g1980 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1980 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Ssu7g1980 212 MobiDBLite consensus disorder prediction 57 79 - -
Ssu7g1980 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Ssu7g1980 212 MobiDBLite consensus disorder prediction 194 212 - -
Ssu7g1980 212 MobiDBLite consensus disorder prediction 149 184 - -
Ssu7g1980 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Ssu7g1980 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Ssu7g1980 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Ssu7g1980 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1980 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1980 212 Gene3D - 57 188 - -
Ssu7g1980 212 MobiDBLite consensus disorder prediction 57 85 - -
Ssu7g1980 212 MobiDBLite consensus disorder prediction 149 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1980 Ssu-Chr7 39452219 39453779 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1980 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 85.446 2.42e-128 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1980 K02885 - gmx:100527501 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1980 7 39452219 39453779 Ssu7g1980 7 39452219 39453779 ECH