Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1979 ATGGTGTCTCTGAAACTTCAGAAGCGGCTTGCCGCTAGCGTTCTCAAATGTGGCAAAGGCAAGATTTGGCTAGACCCTAATGAGGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATAAGGAAGTTGGTTAAGGATGGGTTTATTATCAGGAAGCCAACTAAGATTCACTCCCGCTCCCGCGCTCGCCGAATGAAGGAGGCCAAGAGGAAGGGACGCCACTCTGGATATgGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTTAGACGATTGCTTCGCAAGTACAGGGAAGCGAAGAAGATTGACAAGCATATGTACCATGATATGTACATGAAGGTAAAGGGAAATGTGTTCAAAAACAAGAGAGTCTTGATGGAGAGCATACACAAGTCAAAGGCTGAGAAGGCAAGGGAGAAGACTTTATCTGACCAGTTTGAGGCCAAGCGGGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCAAGGAGAGAGGAGCGTTTGGCTCAGGGTCCGGGAGAGAAGCCATCTGCAGCCACAAGTGCTACACCTGCAACAGCATCCCAGCCTGCCCAAGCATCAAAGAAATCAAAGAAGTGA 639 0.4836 MVSLKLQKRLAASVLKCGKGKIWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSAATSATPATASQPAQASKKSKK 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1979 212 MobiDBLite consensus disorder prediction 189 212 - -
Ssu7g1979 212 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Ssu7g1979 212 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1979 212 MobiDBLite consensus disorder prediction 57 79 - -
Ssu7g1979 212 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Ssu7g1979 212 MobiDBLite consensus disorder prediction 149 184 - -
Ssu7g1979 212 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Ssu7g1979 212 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Ssu7g1979 212 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1979 212 PANTHER RIBOSOMAL PROTEIN L19 1 212 - -
Ssu7g1979 212 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Ssu7g1979 212 MobiDBLite consensus disorder prediction 57 85 - -
Ssu7g1979 212 PANTHER 60S RIBOSOMAL PROTEIN L19 1 212 IPR039547 GO:0003723|GO:0003735|GO:0022625
Ssu7g1979 212 MobiDBLite consensus disorder prediction 149 212 - -
Ssu7g1979 212 Gene3D - 57 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1979 Ssu-Chr7 39443802 39445163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1979 1 212 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 84.507 6.42e-128 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1979 K02885 - gmx:100499875 356.295