Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1976 ATGAACCTGGGCCAAAGGAATCGTGCAGTTGGAGCAACAGCCCTTAATGACCGTAGTAGCCGATCACACAGTTGCTTGACTGTTCATGTTCAAGGAAGAGACTTGACATCTGGAACTATCCTACGTGGATGCATGCATCTGGTTGACTTGGCAGGAAGTGAGAGAGTTGACAAATCTGAGGCCACAGGAGATAGGCTGAAAGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAAAAACCAACATGTCCCTTACAGAAATAGCAAACTCACACAGTTACTCCAAGATTCACTTGGGGGACAGGCCAAGACACTAATGTTTGTTCACATAAGTCCAGAGGTCGATGCTATTGGAGAAACAATTAGCACCTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCTGCTCGGGTAAACAAGGATGGGGCAGATGTCAAAGATCTCAAAGAACAGATAGCCATCCTCAAGGCAGCATTGGCAAGAAAAGAAAGCGAATCAGAACATTCTTTATCTGGCAGCTCTGAAAAATATAGGACAATGGCTAGTGAGCTATCACCTTATCATGCAAACCAACGGGGTGCAGATATTGTGAGTGATCACCTAGGGTGCCGGCAACCAATGGTTGATGTAGGCAACATAGAGCTTCACAGCAATAGCGCATTGAGACAAAAAACTCAGAGCTATGATTTTGATGAGATGTCAACGAATTCACCACCCTGGCCCCCAGTGAATAATCCTGGACAAAACTACGGGGAAGATGACAAAGAAACTGGTTCAGGAGAGTGGGTTGATAAAGTCATGGTAAACAAGCAAGATGCAAACAAAGCTGAGAACATCTTAGGGTGTTGGGAAGCAGACAATGGGAACTTATCCGAGGTCTTCTATCAGAAATATCTCCAAGATTCTTCCAAAACATACTCAGAACGATCCTACAACATGTTCACGGGAGGGAACCAGTTTAACATTGCTGGTTCAGATGCCATGGATGATCTTGATGATGCAACCACTGATTCCTCGGAACCTGACTTACTTTGGCAATTTAATCATTCCAAACTTACCAGCATAGCCAATGGTAATGGATCAAAGGTTAGGAGACCCGTCTCAAAGGCAACAAATAGCCCAGTATTGAGCAAGAATAATATTCATTCTTCCCTTGGGCCTTCACCTTCACGGAAACAATCAAACGGTGTCTCACATCGAACAGGAAGACACCCAGCTCCAGTTGACATGAAACGTAAAACCGGGAGTAGAAAGTAA 1293 0.4416 MNLGQRNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVDAIGETISTLKFAERVATVELGAARVNKDGADVKDLKEQIAILKAALARKESESEHSLSGSSEKYRTMASELSPYHANQRGADIVSDHLGCRQPMVDVGNIELHSNSALRQKTQSYDFDEMSTNSPPWPPVNNPGQNYGEDDKETGSGEWVDKVMVNKQDANKAENILGCWEADNGNLSEVFYQKYLQDSSKTYSERSYNMFTGGNQFNIAGSDAMDDLDDATTDSSEPDLLWQFNHSKLTSIANGNGSKVRRPVSKATNSPVLSKNNIHSSLGPSPSRKQSNGVSHRTGRHPAPVDMKRKTGSRK 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1976 430 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 427 - -
Ssu7g1976 430 PRINTS Kinesin heavy chain signature 93 114 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 PRINTS Kinesin heavy chain signature 44 62 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 PRINTS Kinesin heavy chain signature 13 30 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 Pfam Kinesin motor domain 1 142 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 MobiDBLite consensus disorder prediction 242 270 - -
Ssu7g1976 430 ProSiteProfiles Kinesin motor domain profile. 1 143 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 177 IPR027417 -
Ssu7g1976 430 MobiDBLite consensus disorder prediction 367 412 - -
Ssu7g1976 430 SMART kinesin_4 1 151 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1976 430 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 427 - -
Ssu7g1976 430 MobiDBLite consensus disorder prediction 367 430 - -
Ssu7g1976 430 Gene3D Kinesin motor domain 1 184 IPR036961 -
Ssu7g1976 430 Coils Coil 157 177 - -
Ssu7g1976 430 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1976 Ssu-Chr7 39402686 39405769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1976 4 143 Calmodulin-binding Proteins AT5G65930 55.714 5.83e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1976 K10406 - gmx:100801279 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1976 7 39402686 39405769 Ssu7g1976 7 39402686 39405769 ECH
Ssu7g1976 7 39402686 39405769 Ssu4g0418 4 6798505 6804452 ECH