Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1975 ATGGCGGCATTGTCGTTTTCAGTGGCATCCGTGGTGGAAGATGTGCTTCAACAGCACGGTACACGGCTCAAAGATCTTGATTTGGAATCGAGAAAAGCAGAAGAAGCTGCATTCAGAAGGTCTGAAGCAGCAGGCTGGCTGAGAAAAATGGTTGGAGTTGTTGCAGCTAAAGATTTACCAGCAGAGCCCTCTGAGGAAGAGTTTAGGCTTGGTTTGAGAAGTGGAATCATTCTCTGTAATGTTCTTAATAAGGTTCAACCCGGAGCTGTACCCAAGGTTGTGGAGAGTCCTGTTGATTCTGCACTGATTCCTGATGGAGCACCATTATCAGCATTTCAGTATTTTGAAAACGTGAGGAACTTTCTGGTGGCTGTGCAGGAAATAGGAGTTCCTACCTTTGAGGCATCTGATCTGGAGCAAGGAGGAAAAGCAGCCAGGATTGTGAACAGCATCTTAGCCCTTAAGTCCTATAGTGAATGGAAACAGACTGGGGGTAATGGTGTGTGGAAATTTGGTGGAACTATCAAGCCCACAATCTCTGCAAAATCTTTTGCTAGGAAAAACTCTGAGCCATTTACTAATTCCTTGTCGAGGAACTCGTCCATCAATGAAAAATCCATGACTGCTCTTACCTCTGATGTTGAGTCTAATAAAATGTCTGGGTCTCATTCTTTGAGTATGCTCGTTCGTGCAGTACTATTAGATAAGAAGCCTGAGGAAGTTCCAATGTTGGTTGAATCTGTCTTGAATAAGGTTGTAGAGGAGTTTGAGCATCGCATTGCAAGCCTGGGTGAACAGACAAAAGTTTCAAAAGGTGCTGTGTCCCAAAGCAATGGATCTGTATCAAAGTTTGTTATGGCAGATAAAAAGATGGATAACAAGATTCCTATGGTAACAAAGAATGAGGGATATATCCATAAAAACTGTGTTAATAATGAGGAATCAAACAGACAACTTCTGAAGCAGCAAATGCTCTTTGATCAACAGCAAAGAGATATTCAAGAACTAAAGCATACAGTTCACACCACCAAAGCTGGTATGCAGTTCCTGCAAATGAAGTTTCATGACGAGTTCTCCAATCTAGGCAGGCATGTTCATAGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCATGTCCAGGATCTTAAGGGAAGTATTAGGGTGTACTGTCGGGTAAGACCCTTCTTATCTGGACAACCAAATTATTTGAGCACAATGGATAGTATACAAGAGGGAACTATCACAATTAATATTCCTTCAAAGAATGGGAAAGGGCACAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCTGCAGCACAATCGGAGGTCTTCTCTGATATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTACAATGTTTGCATATTTGCTTATGGCCAAACAGGATCAGGAAAAACTTACACTATGACTGGACCGAAAGAGATCACGGAGAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTACAGCAGATCAAAGAAGGGACACTTTATGCTATGATGTGTCTGTTCAAATGATTGAGATATATAATGAGCAAGTCAGAGATCTATTGGTTACTGACGGATCAAACAAAAGATATCCTTTTAgctgttatttaaaattatag 1671 0.4087 MAALSFSVASVVEDVLQQHGTRLKDLDLESRKAEEAAFRRSEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNVLNKVQPGAVPKVVESPVDSALIPDGAPLSAFQYFENVRNFLVAVQEIGVPTFEASDLEQGGKAARIVNSILALKSYSEWKQTGGNGVWKFGGTIKPTISAKSFARKNSEPFTNSLSRNSSINEKSMTALTSDVESNKMSGSHSLSMLVRAVLLDKKPEEVPMLVESVLNKVVEEFEHRIASLGEQTKVSKGAVSQSNGSVSKFVMADKKMDNKIPMVTKNEGYIHKNCVNNEESNRQLLKQQMLFDQQQRDIQELKHTVHTTKAGMQFLQMKFHDEFSNLGRHVHSLAHAASGYHRVLEENRKLYNHVQDLKGSIRVYCRVRPFLSGQPNYLSTMDSIQEGTITINIPSKNGKGHRSFNFNKVFGPSAAQSEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKEITEKSQGVNYRALSDLFLTADQRRDTLCYDVSVQMIEIYNEQVRDLLVTDGSNKRYPFSCYLKL 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1975 556 Pfam Microtubule binding 381 539 IPR031852 GO:0008017
Ssu7g1975 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 548 IPR027417 -
Ssu7g1975 556 Gene3D Kinesin motor domain 337 552 IPR036961 -
Ssu7g1975 556 Gene3D - 24 191 IPR036872 -
Ssu7g1975 556 SMART ch_5 39 157 IPR001715 GO:0005515
Ssu7g1975 556 PANTHER KINESIN-LIKE PROTEIN KLP-3 2 548 - -
Ssu7g1975 556 Coils Coil 16 36 - -
Ssu7g1975 556 SMART kinesin_4 393 556 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1975 556 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Ssu7g1975 556 ProSiteProfiles Kinesin motor domain profile. 395 556 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Ssu7g1975 556 Pfam Calponin homology (CH) domain 40 159 IPR001715 GO:0005515
Ssu7g1975 556 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 2 548 - -
Ssu7g1975 556 SUPERFAMILY Calponin-homology domain, CH-domain 41 170 IPR036872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1975 Ssu-Chr7 39398883 39402488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1975 383 540 Calmodulin-binding Proteins AT5G65930 38.182 5.78e-28 117