Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1967 ATGGCAAAAGCAAATGCCAAGAACAAATCCCCCCCCACGGCGCTCCACCCTCCTTACTTCGAGatgATCGCGGATGCGATATCGGCGTTGAAAGAGCGCACGGGTTCGAGCCAGCCAGCAATAGCCAAGTTCATCGAGGACAAACACGCCAAAGTGCTCCCTCCCAACTTCAGGAAACTTCTCTCCGTCCAGTTGAAGAAATTGGTCAAATCAGAGAAGCTCTACAAAGTCAAAAACTCCTACAAGCTTTCTTCCTCCGAGAAGACCGAAACCGCGGCTAAACAGAAGAAGGTGGGTGAGAAGACCAAGAGGCTGAGTCAGGTGAACACGCCCGAAGCGCTCAAGAAGAAAGCCCCCAACAAGAGGGACGCGGCTAAGAAGAAATCTGTGGCGGTGACAGCCTCGGGTACGAAAGTGAAGCGTTTGAGTCAGGTGAAGACCCCTGAGGccttgaagaagaagaagcccaACTTGACCCCCATGAAGCGCAAGACTACTTCCAAACCCGTTAATCCTTCGAGGCCCAACAAGAGAGCTAGGAAATGA 546 0.5018 MAKANAKNKSPPTALHPPYFEMIADAISALKERTGSSQPAIAKFIEDKHAKVLPPNFRKLLSVQLKKLVKSEKLYKVKNSYKLSSSEKTETAAKQKKVGEKTKRLSQVNTPEALKKKAPNKRDAAKKKSVAVTASGTKVKRLSQVKTPEALKKKKPNLTPMKRKTTSKPVNPSRPNKRARK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1967 181 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1967 181 MobiDBLite consensus disorder prediction 89 103 - -
Ssu7g1967 181 PANTHER HISTONE H1 4 178 - -
Ssu7g1967 181 CDD H15 16 96 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1967 181 MobiDBLite consensus disorder prediction 81 181 - -
Ssu7g1967 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1967 181 Gene3D - 12 100 IPR036388 -
Ssu7g1967 181 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Ssu7g1967 181 SUPERFAMILY "Winged helix" DNA-binding domain 14 97 IPR036390 -
Ssu7g1967 181 PANTHER HISTONE H1 4 178 - -
Ssu7g1967 181 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1967 181 PRINTS Histone H5 signature 145 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1967 181 PRINTS Histone H5 signature 167 181 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Ssu7g1967 181 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1967 Ssu-Chr7 39213312 39213933 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1967 17 131 Single Myb Histone (SMH) Gene Family AT1G72740 34.959 3.75e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1967 K11275 - gmx:100306187 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1967 7 39213312 39213933 Ssu7g1967 7 39213312 39213933 ECH