Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1957 ATGGGTAGGGCTCCTTGTTGTGAAAAAGTGGGGTTGAAGAAGGGAAGGTGGACAGCAGAGGAGGATGAGATCTTGGCAAAATACATTCAGGCTAATGGGGAAGGTTCTTGGAGGTCATTGCCTAAGAATGCAGGATTGTTGAGGTGCGGGAAGAGTTGCAGACTAAGGTGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCCGAAGAGGAAAATACCATCGTTAAGTTGCACGCTTCTTTTGGCAACAGGTGGTCCTTAATAGCAAGTCACCTACCAGGAAGAACAGACAACGAGATAAAAAATTACTGGAATTCTCACCTCAGCAGGAAAATTTACTGTTTCTCGAGGGTAGCTACTACAAAGACCCAACCAGGTGCAGGGGTCATGAGCACACCCAAAGTAGCACCTATTCCTCCCAAGCGGAAAGGTGGAAAAACAAGCCGTTGGGCCATGAAGAAGAACAGAAACTACACCCAAAATGATACCCAGAGGCCCAAACAAAGTTTAACTCAACAGAAAAGTGAGGTCGCAGTTCCGCCGCCACCCACTCCGTCGATAGAGAGTGAGGGTTTTTCTAACGCTGTTGCGGATTTCATGGTTCTGGACGCTGACGTGGCAAGGGTGGGTGAGCCGAGAAGGGAGGAGCTAGAGGTAAATAGAAAATGTGAGAAGAGCCTTGATGGAGTGGAAGAAAGCACCAATGACGACATCTTAGGACTGTGTCAATGGGAGAGCATTAATGAGGGTGGCGGGGCGTTGGGTTTGAGTGACATGTTGGAAAGTTGCTTGGGGGAAACAAGTGGGGTTTGGAACATaactgaagagagagaaagcaaTGACGTGGTGGGTGCTGTTGGTGGGGAAAATGAAAGACGGGGGGATGATACGTGTGGCAATAAAATGGCATCGAGTGAGAGCAGTGTGAATGGGGAAAGTGGAGAATGGTATTCTCGCTCTTCCACGGCCTTGGGTTTGGATGAACCCTGGGATTGGGAGAGCGTCATTGAGTTTAATAATGCTGAGTCCGAAGCTTATAAATGGGAGCACCAAGAGAAACTGCTGTCTTGGCTGTGGGAAGACGATGATTGGGAAAGCGATAGCAAGAAATTGGGAGAGACAGATCCTCTGATACAAAACGATATGGTTGCTTGGTTTCTCTCTTGA 1179 0.4699 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYCFSRVATTKTQPGAGVMSTPKVAPIPPKRKGGKTSRWAMKKNRNYTQNDTQRPKQSLTQQKSEVAVPPPPTPSIESEGFSNAVADFMVLDADVARVGEPRREELEVNRKCEKSLDGVEESTNDDILGLCQWESINEGGGALGLSDMLESCLGETSGVWNITEERESNDVVGAVGGENERRGDDTCGNKMASSESSVNGESGEWYSRSSTALGLDEPWDWESVIEFNNAESEAYKWEHQEKLLSWLWEDDDWESDSKKLGETDPLIQNDMVAWFLS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1957 392 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g1957 392 SMART sant 66 114 IPR001005 -
Ssu7g1957 392 SMART sant 13 63 IPR001005 -
Ssu7g1957 392 CDD SANT 16 61 IPR001005 -
Ssu7g1957 392 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Ssu7g1957 392 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g1957 392 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g1957 392 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 369 - -
Ssu7g1957 392 MobiDBLite consensus disorder prediction 290 318 - -
Ssu7g1957 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g1957 392 MobiDBLite consensus disorder prediction 304 318 - -
Ssu7g1957 392 CDD SANT 71 112 IPR001005 -
Ssu7g1957 392 Gene3D - 11 67 - -
Ssu7g1957 392 MobiDBLite consensus disorder prediction 156 181 - -
Ssu7g1957 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu7g1957 392 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu7g1957 392 MobiDBLite consensus disorder prediction 129 194 - -
Ssu7g1957 392 Gene3D - 71 116 - -
Ssu7g1957 392 PANTHER MYB TRANSCRIPTION FACTOR 2 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1957 Ssu-Chr7 39034130 39038565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1957 1 392 MYB Transcription Factor Family AT2G47460 42.683 1.38e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1957 Myb_DNA-binding 3.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1957 K09422 - gmx:100814275 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1957 7 39034130 39038565 Ssu7g1957 7 39034130 39038565 ECH
Ssu4g0603 4 9661952 9667119 Ssu7g1957 7 39034130 39038565 PCT