Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1956 ATGGCTCGTCGAAGAGCCAACCTGTTGTTCCTTCTATGTGTTGTGTGCTATTCTCTCAACGCCATTGCGGGAAAGAGCTATTATGACGTACTTCAAGTACCGAAAGGCGCGTCGGACGAGCAGATAAAGAGGGCGTACAGGAAGCTCGCGTTGAAGTACCATCCCGATAAGAACCCTGGCAACCAAGAAGCCAATAAGAGATTTGCCGAGATTAACAATGCGTATGAAGTACTCTCCGATGGCGACAGGAGAAGCATTTACGATAGGTACGGGGAAGAGGGTTTGAAACAGCATGCTGCCGGAGGGGGCAGAGGCGGTGGAATGGGAATGGACTTCCAAGACATTTTCAGCTCCTTCTTTGGGGGAGGTCCAATGGAGGAGGAAGAGAGAATTGTCAAAGGTGATGACGTGGTTGTTGAATTGGATGCAACTCTCGAAGATTTGTACATGGGAAGTTCCTTCAAGGTTTGGAGGgagaaaaatgttttcaagccaGCACCTGGGAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATAGGTCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCAAATGTTAAATATGAAAGAGATGGTTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGATGGGCAGGAAGTGCTATTTTTTGAGGATGGTGAGCCAATAATTGATGGAGAGTCTGGAGATCTAAGgTTTCGTATCCGAACAGCACCCCATGACCTCTTCAGAAGGGAAGGCAATGACTTGCACACCACTGTCACTATAACTCTGgtTCAAGCTCTTGTCGGCTTTGAGAAGACTATTAAACACCTAGATGAGCATCTGGTGGACATAAGTTCAAAGGGAGTCACAAATCCAAAGCAAGTGAGGAAGTTCAAAGGAGAGGGCATGCCACTGCATATGAGCACAAAGAAAGGAGATCTTTACGTCACATTCGAGGTTCTATTTCCAAACTCACTAACCGAGGAGCAGAAAACAAATCTAATAGCAATTCTTGATTAG 1038 0.448 MARRRANLLFLLCVVCYSLNAIAGKSYYDVLQVPKGASDEQIKRAYRKLALKYHPDKNPGNQEANKRFAEINNAYEVLSDGDRRSIYDRYGEEGLKQHAAGGGRGGGMGMDFQDIFSSFFGGGPMEEEERIVKGDDVVVELDATLEDLYMGSSFKVWREKNVFKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCEQCPNVKYERDGYFITVDIEKGMQDGQEVLFFEDGEPIIDGESGDLRFRIRTAPHDLFRREGNDLHTTVTITLVQALVGFEKTIKHLDEHLVDISSKGVTNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPNSLTEEQKTNLIAILD 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1956 345 Gene3D DnaJ domain 23 128 IPR036869 -
Ssu7g1956 345 ProSitePatterns Nt-dnaJ domain signature. 68 87 IPR018253 -
Ssu7g1956 345 Pfam DnaJ C terminal domain 138 329 IPR002939 -
Ssu7g1956 345 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 9 342 IPR044713 GO:0006457|GO:0030544
Ssu7g1956 345 CDD DnaJ 27 80 IPR001623 -
Ssu7g1956 345 PANTHER BNAA09G39960D PROTEIN 9 342 - -
Ssu7g1956 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 338 IPR008971 GO:0006457|GO:0051082
Ssu7g1956 345 CDD DnaJ_C 135 332 - -
Ssu7g1956 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 132 255 IPR008971 GO:0006457|GO:0051082
Ssu7g1956 345 Pfam DnaJ domain 27 88 IPR001623 -
Ssu7g1956 345 SUPERFAMILY Chaperone J-domain 23 123 IPR036869 -
Ssu7g1956 345 SMART dnaj_3 25 83 IPR001623 -
Ssu7g1956 345 PRINTS DnaJ domain signature 63 83 IPR001623 -
Ssu7g1956 345 PRINTS DnaJ domain signature 46 61 IPR001623 -
Ssu7g1956 345 PRINTS DnaJ domain signature 83 102 IPR001623 -
Ssu7g1956 345 PRINTS DnaJ domain signature 28 46 IPR001623 -
Ssu7g1956 345 ProSiteProfiles dnaJ domain profile. 26 91 IPR001623 -
Ssu7g1956 345 Gene3D - 251 329 - -
Ssu7g1956 345 Gene3D - 129 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1956 Ssu-Chr7 39020705 39025534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1956 27 90 C2H2 Transcription Factor Family AT1G74250 42.029 7.60e-09 55.1