Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1952 ATGATGGAAACGAGTTATTCTTCGCGAGTGTTTCGCGGTGTTCGTTTCGTTCTCTGTGGCTTTAATCCCGTCACCGAAAGCCAGATCCGGTTCAAGCTTGTGAATGGCGGTGGAGTGGACGTAGGGCAGTACGGTGAGGGTTGCACGCATGTCATTGTTGAAAAGATTGCATATGATGATCCTGTGTGTGTTGCTGCTAGAAATGATCGGAAGGCGCTCGTCACTGCATTGTGGGTTGATCACAGTGCTGACATTGGAATGCCCGTTGATGCTGCTTCGGTTATATACAGACCTCTTAAAGACTTAGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACTATGGTTGGCCTGATGGGTGCACAGTTTTCTAAGCCATTGGTGGCAAACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTAGCCAAGAGATTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGAATGGGTGCTTCTTCCTGAAGACAAATACAACAAGAGTGGTTTTGAACTACAGATTATGGAGGAAGAGGCCAAGGATTCtgaggaagaggatgaagatTCTAAGCTGGGACAATCAGGGGGAAGAAGTAGAAAACAAAGTCCCCTTAGTTCGAAATTTGGTATAGCTGCTGCTCATGGATTGTCAAAATCAGTAAGAGAGGCATCAAATGCCTTACCAGATTCTACTGGTCCACATGTTTTGCCAAATGTCAATAATGGTGAAGACTCTTTAACCATTCCAGGAAATAAGAACAGATCTGATCAAGACTTGAGCTTTCATAATGTTGATGAGTCAAAGATAAGTTATCAGGCTCCTGATGTTTCTAGACATTCTACATCATGTCAGTTACCTGACAAATATGTAAAGACCAGTGAGTCTAAGAATGCTGATTTTCCAAGGGCACTTGGCTTACAGGATCTTGGCATTACGGGAAATACAAATTCATCTGGTCAGCAACCTGATCTGCATGACAACACTTCGGAGTCTAAGAAGTTAAGTGACTTGAGATCATCTTCTGCAAGTGCTGCTGGAGTTGCACATTCAAACGAAAAGCTTAGAACTACGACTTATTCTAGGAAAAACCAAAGGGGATTTACCCTTCCAAGGATCTTGGATGAAAGCTCAGGCAGAGAAGGCAACAACTGTGAAAACAGTAAGGTTGAAAAGGCAAGTGACGGTATCAAATCTACCAGTGTTGAAGTTTCTGGGAAAGGAAGTGATTATATTAAAGAAGACAAGCCAATTAGTTTATTGCCTCAAAAGAGGATAAATGAAGCTtcttttactaaattaaaatcaagaaagatGACTGCTGATTCAAAATTCTCCATCCCATCTGCAAATGGTAAATCTCAAGGATTAGAAGTGACATCTCACGTTGATGAGCCACCTGAAGCTGACGACTATTTTTCTATAGGCAAAGATGGTATAAATAACTCAAACACATGCTTAGTTTCTAAACCTGCAGGTTCTACCTCCAACTCCCTGGCATTTGATGAGCCTTTCTCAAGAAATGCAAGCCTAGAATCTGCTCAGTGGGATAATGTCCATAAGAATTCACCACAAACAGCTGTTCAGAGCTTAAGTGAGTCTAAAATTAATGGCAAGCCTGATATCACAGGTTCTGGAATGCGACAAGTTGATGGTAATGAAGCAGAGCAACATAATGTCACTAAAAATCTTGATTGTTCATCACTGGAAAACAAAAAGTCACATAATGTGGAACCCGCTGGTTGTACTAATTTGGGTTTAAGCAATGAAAAAAGTAATGAACTGATTAGAAAATCACCCCGAAGGAAGTCGGTTGCCAAGAAAAATTCAGGTTCTAAACCTAAAGTAGGTGCCACTGCTAGACAGAAAAGATCACTTTCCTGGAATAAAACTACCTTGCAAGGTGAAGATGTAACTTTTTCCAGTGGAAGCAAAGAGATTGCAACTTGCGATGTAAAGATACATCAGGGATGTCCCCAAATCcttaatgttaataaaacaaTCGAGCAAGAAACAGTTAGTAAATATGCAGAAGATGCTGGTGACAGAACTGAGTTTTTGGATGATGAAACTGAGGCTCCAGATGACAAATGTGAATATGAGTTAGTTATGGCAATTGATGAAGATTTGGtttgtctttcaaaaaaaacagataaagcaacaAAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAACAAAACTGAGAAACAGAAGCCATCTTCACTGGTAGTAAAGCGTCAAGCGGGAAAATGTCCTGCTGGTAAAGCCAAGGCCACAGTTAGTAAATATGCAGAAGATGCTGGTGACAGAACTGAGTTTTCGGACAATGAAACTGAGGCTCCAGATGACAAGTGTGAATATGAGTTAGGAATGGCAGTTGATGAAGAAGCGGTTCATCTTTCAAAAAAGCCAGATACAGCAACAAAAGAGAAGTCAGAAGCAATTTGCCCTGCAACAAAATGTGAAGAGGCAATGCCTCCTAAGAAAGGCACAAATAAAACTGAAAAACAAAAGCCATCTACACTGGTAGTAAAGCATCAAGCAAGAAAACGTCCTGCTGGTAAAGCCAAGGCCACAGTTGCCAAGGAATTATCGAAATCTAAAGTGGCAGTATCTGGGGAGAAGATTCCTAATGAGACGGGCATGAGCCAGAGATAG 2772 0.4015 MMETSYSSRVFRGVRFVLCGFNPVTESQIRFKLVNGGGVDVGQYGEGCTHVIVEKIAYDDPVCVAARNDRKALVTALWVDHSADIGMPVDAASVIYRPLKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKEWVLLPEDKYNKSGFELQIMEEEAKDSEEEDEDSKLGQSGGRSRKQSPLSSKFGIAAAHGLSKSVREASNALPDSTGPHVLPNVNNGEDSLTIPGNKNRSDQDLSFHNVDESKISYQAPDVSRHSTSCQLPDKYVKTSESKNADFPRALGLQDLGITGNTNSSGQQPDLHDNTSESKKLSDLRSSSASAAGVAHSNEKLRTTTYSRKNQRGFTLPRILDESSGREGNNCENSKVEKASDGIKSTSVEVSGKGSDYIKEDKPISLLPQKRINEASFTKLKSRKMTADSKFSIPSANGKSQGLEVTSHVDEPPEADDYFSIGKDGINNSNTCLVSKPAGSTSNSLAFDEPFSRNASLESAQWDNVHKNSPQTAVQSLSESKINGKPDITGSGMRQVDGNEAEQHNVTKNLDCSSLENKKSHNVEPAGCTNLGLSNEKSNELIRKSPRRKSVAKKNSGSKPKVGATARQKRSLSWNKTTLQGEDVTFSSGSKEIATCDVKIHQGCPQILNVNKTIEQETVSKYAEDAGDRTEFLDDETEAPDDKCEYELVMAIDEDLVCLSKKTDKATKEKSEAICPATKCEEAMPPKKGTNKTEKQKPSSLVVKRQAGKCPAGKAKATVSKYAEDAGDRTEFSDNETEAPDDKCEYELGMAVDEEAVHLSKKPDTATKEKSEAICPATKCEEAMPPKKGTNKTEKQKPSTLVVKHQARKRPAGKAKATVAKELSKSKVAVSGEKIPNETGMSQR 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1952 923 MobiDBLite consensus disorder prediction 360 380 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 247 284 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 260 283 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 598 618 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 864 880 - -
Ssu7g1952 923 Gene3D BRCT domain 99 223 IPR036420 -
Ssu7g1952 923 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 788 IPR044254 -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 761 820 - -
Ssu7g1952 923 SUPERFAMILY BRCT domain 8 90 IPR036420 -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 597 655 - -
Ssu7g1952 923 SMART BRCT_7 8 86 IPR001357 -
Ssu7g1952 923 SMART BRCT_7 106 183 IPR001357 -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 335 351 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 203 231 - -
Ssu7g1952 923 Gene3D BRCT domain 1 94 IPR036420 -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 333 433 - -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 856 923 - -
Ssu7g1952 923 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Ssu7g1952 923 SUPERFAMILY BRCT domain 109 191 IPR036420 -
Ssu7g1952 923 MobiDBLite consensus disorder prediction 800 820 - -
Ssu7g1952 923 Pfam twin BRCT domain 111 175 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1952 Ssu-Chr7 38977730 38982413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1952 129 244 Core DNA Replication Machinery Family AT4G02110 63.793 2.63e-38 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1952 K10728 - gmx:100799144 1457.58