Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1951 ATGTCCCTTCCTGCTGATAAAAGTGACAACTCAACCTTACCAAGTAATAAGTCAGAGAATTTAGCTGAAGAGGAGAAGGAGAATAGACCAATTGGAGAGCAGGATCTAGTGAAGGGCAGAAGCGATGgcaatccaactgttaaatcTAGTGTAAGGCCAGCCAAGATCAAGTCTACGAAATTGGGGCTCAATCCATCTATATCAGAATCTAACACGAGAGTAGAAGCTGAAGCCGTATCTTTTATATTAAGTGGGCATCGCCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATACCAGGCGACACACTTCATAGCTCCAGACCCCATACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGAAAATTCTTGCTAGAGGAGCCTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGCGCAATCAATATGGAGGCTCCGAGAAAGTGGCGGCTGTTGaaagaaagaacaggtcatggCGCCTTCTATGGAATGCGTATCATTGTCTACGGCGATTGCATTGCCCCCCCTTTGGATACTCTGAAGCGTGTCATCAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTCCTTATACTCGCTTCCTTGGTACTGGAATCGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATTTGTGGATCCAAGAGTTCTTAAAGCATGAGATACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGCAAGCCCGGGTTCTCCCTTGAGAGACATGCATTATATGGTACTCATGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGTAGGGCAGAAGAGAGTGTTGAAGAACTCGTTGCTCCTGAGGATTCCAGTGATAATGATGATATAATTTGCCAAGTATGTGAATCCCGGGATAGAGGAGATGTAATGCTCATTTGTGGTGATGAAAGAGGATCCGTCGGCTGTGGAGTCGGTACCCATATCGATTGCTGCGATCCTCCACTGACAGATGTCCCTGAAGAGGATTGGTTTTGCCCAAAATGCAGTAGCACCCGAAACTGCTCGAACAATCccagtaaaaagaaaaagtgtgttTTATCTTCATCTAAGAGTAAGTGA 1158 0.4292 MSLPADKSDNSTLPSNKSENLAEEEKENRPIGEQDLVKGRSDGNPTVKSSVRPAKIKSTKLGLNPSISESNTRVEAEAVSFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRKILARGAYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIIVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLGTGIDYAVVSPGMPRVDLWIQEFLKHEIPCVVADYLVEYVCKPGFSLERHALYGTHAWAERSFDKLKSRAEESVEELVAPEDSSDNDDIICQVCESRDRGDVMLICGDERGSVGCGVGTHIDCCDPPLTDVPEEDWFCPKCSSTRNCSNNPSKKKKCVLSSSKSK 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1951 385 Gene3D BRCT domain 175 272 IPR036420 -
Ssu7g1951 385 Gene3D BRCT domain 73 143 IPR036420 -
Ssu7g1951 385 SUPERFAMILY FYVE/PHD zinc finger 289 362 IPR011011 -
Ssu7g1951 385 MobiDBLite consensus disorder prediction 1 55 - -
Ssu7g1951 385 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g1951 385 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 3 361 IPR044254 -
Ssu7g1951 385 Pfam BRCA1 C Terminus (BRCT) domain 84 141 IPR001357 -
Ssu7g1951 385 SMART PHD_3 310 362 IPR001965 -
Ssu7g1951 385 SUPERFAMILY BRCT domain 82 141 IPR036420 -
Ssu7g1951 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 365 IPR013083 -
Ssu7g1951 385 ProSiteProfiles Zinc finger PHD-type profile. 308 364 IPR019787 -
Ssu7g1951 385 MobiDBLite consensus disorder prediction 19 36 - -
Ssu7g1951 385 Pfam PHD-finger 310 363 IPR019787 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1951 54 291 Core DNA Replication Machinery Family AT4G02110 61.811 1.22e-109 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ssu7g1951 BRCT 1.1e-05 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1951 K10728 - gmx:100799144 651.358