Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1946 ATGAGAGACATACAGCTCCCTGTGGTTGCAAGAGACATGGAAGAAGTTGTATTGCTGGTTGATGATTTGAGATCACTTTCTGGGATTTCTCGCTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCCAAAAGCTTGGAAGCTCCTTGTGCTTGTTCTGGAACAGTTAAGTTTGCTCATAGAGATTGCATTCAGATATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTCTCCAGCAATATGAACCTGGATATACAGCAGTACCGAAAAAATCGCAAATAGCTGATGCAGCAATGACCATTAGGGATAGCCTGCAAATTTCAAGGATTGAACAAGAACCGTTAAACACAAGAATAGTGAGTATAGTTGAAGGAAACAATTACTCTGAATGCACGTATGCTGCAGATAGAAGCGCGGCTTGCTGTCGATCCCTGGCTTTAGCTTTTACACTCATCTTGCTTGTAAGGCATCTTTTTGCAATCCTTACAGATGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTTTACTAAGGGCCAGTGGAATTATTATACCCatgtacataattattaagaCGATCGGAGCCATTCATAACAACATTAAGCGTCACCATCATCagGATTCTGACGATGACTCATCAATATCTGATGAAGACGATGAAGAAAATGAGACACCAGATGATGCAATTTTAAGACATTCACAATCATAG 720 0.3861 MRDIQLPVVARDMEEVVLLVDDLRSLSGISRCRICHEEEFESSKSLEAPCACSGTVKFAHRDCIQIWCNEKGNTTCEICLQQYEPGYTAVPKKSQIADAAMTIRDSLQISRIEQEPLNTRIVSIVEGNNYSECTYAADRSAACCRSLALAFTLILLVRHLFAILTDGMEDYPFTILTVFLLRASGIIIPMYIIIKTIGAIHNNIKRHHHQDSDDDSSISDEDDEENETPDDAILRHSQS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1946 239 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 9 236 - -
Ssu7g1946 239 Pfam RING-variant domain 32 79 IPR011016 GO:0008270
Ssu7g1946 239 Pfam Protein of unknown function (DUF3675) 85 197 IPR022143 -
Ssu7g1946 239 CDD RING_CH-C4HC3_MARCH 32 79 - -
Ssu7g1946 239 SUPERFAMILY RING/U-box 31 84 - -
Ssu7g1946 239 MobiDBLite consensus disorder prediction 208 239 - -
Ssu7g1946 239 ProSiteProfiles Zinc finger RING-CH-type profile. 24 86 IPR011016 GO:0008270
Ssu7g1946 239 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 9 236 IPR033275 -
Ssu7g1946 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 89 IPR013083 -
Ssu7g1946 239 SMART ringv_2 31 80 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1946 Ssu-Chr7 38837501 38840458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1946 32 79 C3H Transcription Factor Family AT2G37950 42.857 8.78e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1946 - - gmx:100797029 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1946 7 38837501 38840458 Ssu7g1946 7 38837501 38840458 ECH
Ssu4g0593 4 9506198 9508354 Ssu7g1946 7 38837501 38840458 PCT