Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1945 ATGGCCTTGAGGCCTTCATCTTTGATGATCCTACTGGCATATGGTGCGCTGATCATTCTCGTCTTTTTGACGCCATGCTGGTATGTCATGGTCATACGTATGGAGAAACGTGTGAATTTGAACTCAAAGAACATCGTGTCCCAATTGCAATCAGAAATTAAGCACTCGGCCGAACTGTTACACCCAATGAAATCATCATCAACCAATTTAGCAAAATATCTGAGTTCAGCCCTTGATCCTACTGATATCTCCTTCTCTGATATTGAGAGCAAGGTGGCTCCATTATTATTTCAAGCATTTGAGACAGTTCCTTACCTAGCCCAGATCTCATACATAGGGATGGAAGGTCTCTTTTTCACGTACTACACTGATCATGATCAAGCTCTAGCTATGTACTCTAACTCATCATCTAGTTGGGGTGCTTCAAATATAACCTATATTCAACCTGTGAATCGTGAAACTGGAGAGGCACTTAATGTGTCAAATGGTTTTGCGTCATTGGGAACCAAGTGGGGCAATGATGGTGATCTTTTGTTCCTTAGTTCAGCTGGAATCACAAGAAGAGGAGTAATCTCTCTTGGGTTTTCGGCAACGGCAATAACTGATTTTGTCACTCGCATTGACCAACAAGGCACGAGGTCCTATTTGGCTACCAAAGATGGAAAAGTGCTTGTGGAAGGGATTCAACATACCCGTTTGGTCATTTCTAATGATACGGTTTCCCTCCAATCAGTGAATGCAAATGGCGGTCACACGAGTAATGAGGGCACTGTCTCGTGCAAGAATGAAGCCGCTGCTTCTAGTTTGAATATTCGGGACACTGAATATTTAATTCACTGCTACACCGTCGATATTATGGGAATAGAATCGGTGTATGTCTTGGCTGTCCCACAGAATGGATTTGTGAGCTTTGGTCTCAATTACAAGAAAAAGGGATTGATACTGTTTGTGGTAACGATGGTCACGATATTTATTGCTTTCTTCAGTTTTCTATTCATAAACTGTAGAGCCACGAGGCGAGAAATGCATCTGTGCGCCTCACTCATCAAACAGTGTGAAGCCACCCAACAAGCTgagaaaaagaatatgaatAAGAGCATCGCTTTTGCAAGTGCCAGCCATGATGTTCGCGCTTCTCTCGCAGGCATTACCGGTTTGATAGAGATCTCTTATGAGTTAGTTGTCCCCGGTTCTGAATTGGAGACCAATTTGAAACAAATGAATGATTGTACCCAAGACTTACTAGGACTGTTGAATTCTATACTTGACACAAGCAAAATAGAGGCGGGGAAAATGCAACTTGAGGAAGAGGAGTTTGATGTGTTTCATCTCCTAGAAGATGTAGTTGACTTTTACCATCCCGTGGCTATGAAGAAAGGTGTAGACCTCGTATTGGATCCTTGTAATGGTTCTGTTGTGAAATATTCACGCGTGAAAGGTGACAGGGGCAAACTAAAACAAGTTATGTGTAATTTACTGAGCAATGCTGTCAAATTTACTGATGAGGGGCACATAGCGGTTCGTGCATGGACTCAGAAGCCAAGATTGCAGAACTCAACAGTTACTTGTAACCAATGTggttttaagaaatatttatcaCCCTTTTTTCGTAACAAAAACAAAGCACAAGATGACGTGGAATCCATGCATTCAATCCAAGAAGATCCACATTCTATGGATTTTATATTTGAAGTGGATGACACGGGAAAAGGAATTCCTAAAGAGAATTACAAGTCTGTGTTCGAGAATTACGTCCAAGTCAAAGAAACTGCTCTTGGCCAAGGAGGAACTGGCTTGGGACTTGGGATTGTGCAGTCGTTGgTGCGTTTGATGCATGGAGATATTGAAATTGTGGAGAAGGATACTGGTGAGAAAGGAACATGCTTTAGGTTCAATGTGCTCCTCACTTTAAGTGAGAGTGAGACAATAACAGATGGTAGCACAAGGGAAGGTATTGAGTGTGGATCAGGCGACAAAAAGCAAGCTCAGGGACAAACCATGCATGCTACAAGTTCTGGTTCTAGAATTTGTTCCATGAGTCCTAGGTTACATATTTTCAGCTCTAGTCCTAAGCCTGCGGCTTCCCTTGTGGTCCTTTTGATTGCTGACGAGGAACGCCAGAGGACTTCACGAAGGTTCATGGAGAGGTTAGGGATCAAAGTTGAAGTTGTGAATCCAGGGAAACATCTGTTTTATACTCTCAAGAAGATCAAGCAGAAGGGTCAGCATTCCAGTGGACAAATTTCTCCAGGGTCTTCAGATTTGAGTTCTCGATCTACATCTCATAATTCTCTTGCCATAGCCACAAGAGTTCCTTTGAGTTCTATGGATGGAACTGAGCACATGCCTTTAGTTTTCAAGAAGACAGATATTGGAGCTGCCCCCGGCTTCATCCTTATTGTGATTGATGCAAATGCAGGACCATTTTCTGAGCTTTATAGGATTGTATCCAGGTTCAAAAAAGACCTTTGCAACCCAtgtaaggttgtttggttggataaGCCCCTTATGCGCAGTATCAACCTCAGAGCCCTTGATCAAGAAGACATTGTCATATCCAAACCATTTCATGGTAGTCGTTTGTTCCAAGCTATAAAGCTTCTTCCTGAATTTGGTGGTGGTTGGCAAAGCAATTCTAGTAAGGCTAAGAGGGAAGCTGAACAAATTTGGAAGGGAAGCCGACAATCCAAGGCAAAACTAACTCATGTTCATCAAGGAGAAATACAAGAATGTGGGGACTCATCAGGGTGTCACAAACCCTTGAGTGGTAAGAAGtttttggttgttgatgactctGAATTGTTACGCAAGCTAGCTTCGGCTACTTTGATTTCTCTTGGTGCAACTATGGAGCAATGTGAGAATGGTGAACAAGCTGTGCGGCTAGTTGATGAGGGTCTATCTAGGAATTTTCCTAATCCTCCTTATGATTACATCTTAATGGACTGTCAGGCAATGACTATCAACTATgTAATGGATGGGTTTGAGGCAACGAAGTGGGTACGAAGGATGGAGCAACCCTATGGAGTTCGCATTCCTATCATTGCATTGACTGCTTGCACTGAGAAAGTGACGATAAAGACTGGAATAGACTTTCATATAGTCAAGCCCATCAAGAAAGAGCATTTACTTGAAGCTGTCAGATATATACACGGCAAAGCGTGA 3165 0.4164 MALRPSSLMILLAYGALIILVFLTPCWYVMVIRMEKRVNLNSKNIVSQLQSEIKHSAELLHPMKSSSTNLAKYLSSALDPTDISFSDIESKVAPLLFQAFETVPYLAQISYIGMEGLFFTYYTDHDQALAMYSNSSSSWGASNITYIQPVNRETGEALNVSNGFASLGTKWGNDGDLLFLSSAGITRRGVISLGFSATAITDFVTRIDQQGTRSYLATKDGKVLVEGIQHTRLVISNDTVSLQSVNANGGHTSNEGTVSCKNEAAASSLNIRDTEYLIHCYTVDIMGIESVYVLAVPQNGFVSFGLNYKKKGLILFVVTMVTIFIAFFSFLFINCRATRREMHLCASLIKQCEATQQAEKKNMNKSIAFASASHDVRASLAGITGLIEISYELVVPGSELETNLKQMNDCTQDLLGLLNSILDTSKIEAGKMQLEEEEFDVFHLLEDVVDFYHPVAMKKGVDLVLDPCNGSVVKYSRVKGDRGKLKQVMCNLLSNAVKFTDEGHIAVRAWTQKPRLQNSTVTCNQCGFKKYLSPFFRNKNKAQDDVESMHSIQEDPHSMDFIFEVDDTGKGIPKENYKSVFENYVQVKETALGQGGTGLGLGIVQSLVRLMHGDIEIVEKDTGEKGTCFRFNVLLTLSESETITDGSTREGIECGSGDKKQAQGQTMHATSSGSRICSMSPRLHIFSSSPKPAASLVVLLIADEERQRTSRRFMERLGIKVEVVNPGKHLFYTLKKIKQKGQHSSGQISPGSSDLSSRSTSHNSLAIATRVPLSSMDGTEHMPLVFKKTDIGAAPGFILIVIDANAGPFSELYRIVSRFKKDLCNPCKVVWLDKPLMRSINLRALDQEDIVISKPFHGSRLFQAIKLLPEFGGGWQSNSSKAKREAEQIWKGSRQSKAKLTHVHQGEIQECGDSSGCHKPLSGKKFLVVDDSELLRKLASATLISLGATMEQCENGEQAVRLVDEGLSRNFPNPPYDYILMDCQAMTINYVMDGFEATKWVRRMEQPYGVRIPIIALTACTEKVTIKTGIDFHIVKPIKKEHLLEAVRYIHGKA 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1945 1054 Gene3D - 432 642 IPR036890 -
Ssu7g1945 1054 ProSiteProfiles Response regulatory domain profile. 925 1051 IPR001789 GO:0000160
Ssu7g1945 1054 SMART REC_2 924 1047 IPR001789 GO:0000160
Ssu7g1945 1054 Pfam Response regulator receiver domain 927 1048 IPR001789 GO:0000160
Ssu7g1945 1054 Gene3D - 905 1051 - -
Ssu7g1945 1054 CDD HisKA 369 426 IPR003661 GO:0000155|GO:0007165
Ssu7g1945 1054 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 419 633 IPR036890 -
Ssu7g1945 1054 Gene3D - 351 431 - -
Ssu7g1945 1054 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 353 432 IPR036097 GO:0000155|GO:0007165
Ssu7g1945 1054 MobiDBLite consensus disorder prediction 646 665 - -
Ssu7g1945 1054 SMART HisKA_10 364 430 IPR003661 GO:0000155|GO:0007165
Ssu7g1945 1054 SUPERFAMILY CheY-like 921 1050 IPR011006 -
Ssu7g1945 1054 PRINTS Bacterial sensor protein C-terminal signature 595 613 IPR004358 GO:0016310|GO:0016772
Ssu7g1945 1054 PRINTS Bacterial sensor protein C-terminal signature 561 575 IPR004358 GO:0016310|GO:0016772
Ssu7g1945 1054 PRINTS Bacterial sensor protein C-terminal signature 579 589 IPR004358 GO:0016310|GO:0016772
Ssu7g1945 1054 ProSiteProfiles Histidine kinase domain profile. 371 637 IPR005467 -
Ssu7g1945 1054 CDD REC_hyHK_CKI1_RcsC-like 926 1047 - -
Ssu7g1945 1054 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 480 635 IPR003594 -
Ssu7g1945 1054 PANTHER HISTIDINE KINASE CKI1-LIKE 33 1048 - -
Ssu7g1945 1054 SMART HKATPase_4 480 637 IPR003594 -
Ssu7g1945 1054 PANTHER TWO-COMPONENT HISTIDINE KINASE 33 1048 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1945 Ssu-Chr7 38818526 38825158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1945 1 1053 Histidine Kinase Gene Family AT2G47430 39.598 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu7g1945 HATPase_c 5.8e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1945 - - var:108325233 1341.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1945 7 38818526 38825158 Ssu7g1945 7 38818526 38825158 ECH