Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1942 ATGGCTTCGACCCAGCGCCCCGCGAGTTCGGGATCGTCCGAGGGCGGAGATGCGGCGATGGACGAGAGGAAGAGGAAGCGGATGGAGTCGAACCGCGAATCGGCGAGAAGATCGCGGATGAGGAAGCAGAAGCAGCTGGAAGACCTCGCCGACGAGGCGAGCCGATTGCAGGCCGCGAACGAGCGTCTCGCGCAGAGCATAAAGGCGAAGGAGGAAGCGTGGGTCGAGATGGAAGCCGCCAACGACATCATCAGAGCTCAGACCATGGAACTCGCCGACCGGTTGCGTTCTCTGAACTCGATCCTCGAGATCGCCGAAGAGGTTAGCGGTCTCTCCGTCGAGATCCCGCAGATTCCGGACCCTTTCCTCAGGCCCTGGCAGATCCCTCACCCTATCATGGCGTCGCCCGACGTGTTCCTCCATGGAAATCAAGGCCTGTTCGCTTGA 447 0.6152 MASTQRPASSGSSEGGDAAMDERKRKRMESNRESARRSRMRKQKQLEDLADEASRLQAANERLAQSIKAKEEAWVEMEAANDIIRAQTMELADRLRSLNSILEIAEEVSGLSVEIPQIPDPFLRPWQIPHPIMASPDVFLHGNQGLFA 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1942 148 CDD bZIP_plant_GBF1 24 73 IPR045314 GO:0003700|GO:0006355
Ssu7g1942 148 SUPERFAMILY Leucine zipper domain 23 76 IPR046347 GO:0003700|GO:0006355
Ssu7g1942 148 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 26 41 IPR004827 GO:0003700|GO:0006355
Ssu7g1942 148 SMART brlzneu 19 83 IPR004827 GO:0003700|GO:0006355
Ssu7g1942 148 PANTHER BZIP TRANSCRIPTION FACTOR 53 1 136 - -
Ssu7g1942 148 Gene3D - 21 73 - -
Ssu7g1942 148 Pfam bZIP transcription factor 23 76 IPR004827 GO:0003700|GO:0006355
Ssu7g1942 148 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 136 - -
Ssu7g1942 148 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 21 68 IPR004827 GO:0003700|GO:0006355
Ssu7g1942 148 Coils Coil 25 73 - -
Ssu7g1942 148 MobiDBLite consensus disorder prediction 17 50 - -
Ssu7g1942 148 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1942 Ssu-Chr7 38779163 38779609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1942 18 139 bZIP Transcription Factor Family AT3G62420 53.600 6.44e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu7g1942 bZIP_1 1.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1942 K25786 - gmx:778189 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1942 7 38779163 38779609 Ssu7g1942 7 38779163 38779609 ECH
Ssu7g1942 7 38779163 38779609 Ssu4g0584 4 9363565 9364044 ECH
Ssu4g0581 4 9309955 9310314 Ssu7g1942 7 38779163 38779609 PCT