Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1938 ATGGTGTCCAAACCTACCGACTCTGCTTCCAAACCTCGAAAACAACATGGAGAGGCAGCAAATGATGCTATTGGGACCTTGTCCCTCAAGATAAATCAGTTGAAAAAGCAAATCCAGGCGGAGAGAATTGTATACATTAAAGAAAAAATTCAGAGGAATGAGAAGAAGCTACAATGCCATATGTCAGGAGTCTTGTCAACAATATCAACAAGGGGTTCTTCACAGATGGAGGAAAATAGGAAAATTCCAATTCTTTCTTCAAGAATTGACCATCCTTTATGTAGATTCAGTGGTTTCTCTCCAGTGTCAGGAGACAAAGACCACAGCAACCAAGATGTATTATCTGCTACAAGTGTCAAAATTCCATATATTGAAAGATTACCGCCATATACCTCTTGGATATTTCTGGACAGAAATCAGAGAATGGCTGAAGATCAGTCAGTTGTTGGAAGAAGACGTATCTACTATGATCAACATGGAAGTGAAGCACTGATATGTAGTGACAGTGAGGAAGAGTTAACAGAACATGAGGAAGAAAAACATGAATTTTCTGAGGCTGAGGACCGTGTACTATGGATGGCATTTGAGGAATATGGGCTAAATGAGGAGGTACTGAATATTGTTAGCGAATTTGTTGGGGGCACCAGTTTAGAAATTCAGGAGAGATACAAAAGTATCAAGGAAAAGAACATTGGTAGGTTGGACCAGCCTTCAGAAAACTCAGGAGAATATGAATCTACTATTGACATATGTCCAGAGAAGAGCCTGAGTGCTGCATTAGATTCTTTTGATAATCTTTTTTGTCGCCGGTGCCTGCAGATTTTTGACTGTCGTCTGCATGGCTGTTCTCAACCTTTAATATATCCTAGTGAAAAGCAGACAGTTTGGTCTGATCCTGAAGGTGACAGGAAACCATGCAGTGATCAGTGTTACCTTCAGTTAAAGGTAGTCAAAAGTGTGTCAGAAGATTCAACTTCTGGGTCTGATCAGAATAAGAGAACTACAAATATGGAAGAGGCAGATGCGATATTGGCACCCTCCACTATGGAGGAACCTAGTAATCAGAGTGCATCACCTTTTCCAACCGAAGTTGATTGTTGTGGATCTCTCAATTTAAATGTTCCTATCACAGTTAGTGTGGAAAAACGGAAAGTCACAAATCAATCAGACACAGCACCCTGTGACTCAACACTCCCTCCTGATGATTCTCAGAATTCTTATAAAAAGCTGAAGACAATCTCAGATGATGTAGTTACTGTAAATAGTGATTCTAGCAAGAACCTAAATTTGGGTACATGTGATGAAAGTGAACATACAATTACATGTGCAATTTTGGACAAATCTGTTAagcataattcaaataaattaacagATTCTTCTAGCAGTTGCCATGGTGATGAGCAGGACAAAAGTGTTGGGGATGGACCTGAAGATCCTACAAATAAGACAGAATTTAATAAGTTGACCAATTCAATGGAAGCGAAAGTTGATGGGATGCTAAGTCTCTCAGATTGGAAACCTCTGGAGAAAGAATTATACTTAAAGGGAGTAGAAATGTTTGGCAGAAACAGTTGCCTCATAGCAAGGAACTTACTTTCTGGCTTGAAGACTTGCATGGAAATAGCTAGTTACATGCATTCGGGAGGAGTGTCAGTGCCACATGGATCTGTTGTTGCACCTAGTTCAATCATGGAAGACAAGGGAAAATTTGATGCAGAGTGCACAGACCAGGAGATGCCTTCTAGGTCACGGTTGCTGAGGAAAAGGGGCAAAACAAGGAAGTTTAAATATTCTTGGAAGTCTGCTGGTCACCCATCAATATGGAAAAGAATTGCTGATGGGAAAAACCAATCTTGCAAGCAGTATACACCATGTGGATGTCAGTCAATGTGTGGAAAGGAATGTACTTGTGTTAATGGTGGAACTTGCTGTGAAAAATATTGTGGTTGTTCAAAAAGCTGCAAAAATCGGTTCAGAGGATGCCATTGTGCCAAGAGTCAGTGCAGAAGTCGACAATGCCCATGCTTTGCTGCAGGACGGGAATGTGACCCAGATGTCTGTCGGAATTGCTGGGTTAGTTGTGGGGATGGTTCGTTAGGGGAGCCACCTCGGCGCGGAGAAGGCCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGGATTCTCTTGGCAAAATCTGATGTTGCAGGATGGGGAGCCTTCTTGAAGAACCCAGTTAACAAAAATGATTACTTAGGAGAGTACACAGGAGAACTGATCTCCCACCGAGAAGCCGATAAGCGTGGGAAAATATATGATCGTGCAAACTCATCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCTTATCGCAAAGGAGACAAGTTAAAATTTGCGAATCACTCATCAAACCCCAACTGCTATGCAAAGGTGATGCTGGTTGCTGGAGATCACCGAGTAGGCATATTTGCCAAGGAACACATTGATGCGAGTGAGGAGCTCTTCTATGATTATCGCTATGGTCCAGATCAAGCACCACCATGGGCACGTAAACCTGAGGGTTCCAAGAGAGACGAATCAACCGCTCCTCAAGGCAGAGCTAAGAAACACCAGTCTCATTGA 2613 0.416 MVSKPTDSASKPRKQHGEAANDAIGTLSLKINQLKKQIQAERIVYIKEKIQRNEKKLQCHMSGVLSTISTRGSSQMEENRKIPILSSRIDHPLCRFSGFSPVSGDKDHSNQDVLSATSVKIPYIERLPPYTSWIFLDRNQRMAEDQSVVGRRRIYYDQHGSEALICSDSEEELTEHEEEKHEFSEAEDRVLWMAFEEYGLNEEVLNIVSEFVGGTSLEIQERYKSIKEKNIGRLDQPSENSGEYESTIDICPEKSLSAALDSFDNLFCRRCLQIFDCRLHGCSQPLIYPSEKQTVWSDPEGDRKPCSDQCYLQLKVVKSVSEDSTSGSDQNKRTTNMEEADAILAPSTMEEPSNQSASPFPTEVDCCGSLNLNVPITVSVEKRKVTNQSDTAPCDSTLPPDDSQNSYKKLKTISDDVVTVNSDSSKNLNLGTCDESEHTITCAILDKSVKHNSNKLTDSSSSCHGDEQDKSVGDGPEDPTNKTEFNKLTNSMEAKVDGMLSLSDWKPLEKELYLKGVEMFGRNSCLIARNLLSGLKTCMEIASYMHSGGVSVPHGSVVAPSSIMEDKGKFDAECTDQEMPSRSRLLRKRGKTRKFKYSWKSAGHPSIWKRIADGKNQSCKQYTPCGCQSMCGKECTCVNGGTCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGEGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGELISHREADKRGKIYDRANSSFLFDLNDQYVLDAYRKGDKLKFANHSSNPNCYAKVMLVAGDHRVGIFAKEHIDASEELFYDYRYGPDQAPPWARKPEGSKRDESTAPQGRAKKHQSH 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1938 870 SMART set_7 721 842 IPR001214 GO:0005515
Ssu7g1938 870 Pfam CXC domain 660 691 IPR041355 -
Ssu7g1938 870 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 14 868 IPR045318 GO:0006338|GO:0018024
Ssu7g1938 870 Coils Coil 166 186 - -
Ssu7g1938 870 MobiDBLite consensus disorder prediction 453 483 - -
Ssu7g1938 870 MobiDBLite consensus disorder prediction 841 870 - -
Ssu7g1938 870 MobiDBLite consensus disorder prediction 462 481 - -
Ssu7g1938 870 SUPERFAMILY SET domain 622 839 IPR046341 -
Ssu7g1938 870 MobiDBLite consensus disorder prediction 847 863 - -
Ssu7g1938 870 CDD SET_EZH 721 837 - -
Ssu7g1938 870 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 870 IPR025778 GO:0031519
Ssu7g1938 870 Gene3D SET domain 622 838 IPR046341 -
Ssu7g1938 870 ProSiteProfiles SET domain profile. 721 836 IPR001214 GO:0005515
Ssu7g1938 870 MobiDBLite consensus disorder prediction 1 21 - -
Ssu7g1938 870 SMART CXC_2 656 693 IPR033467 -
Ssu7g1938 870 ProSiteProfiles CXC domain profile. 608 707 IPR026489 -
Ssu7g1938 870 SMART sant 179 229 IPR001005 -
Ssu7g1938 870 SMART sant 501 551 IPR001005 -
Ssu7g1938 870 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 14 868 - -
Ssu7g1938 870 MobiDBLite consensus disorder prediction 385 407 - -
Ssu7g1938 870 Pfam SET domain 732 835 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1938 Ssu-Chr7 38741458 38750661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1938 710 839 C2H2 Transcription Factor Family AT2G23740 26.531 3.44e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu7g1938 SET 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1938 - - gmx:100808730 1632.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1938 7 38741458 38750661 Ssu7g1938 7 38741458 38750661 ECH
Ssu4g0575 4 9168086 9216660 Ssu7g1938 7 38741458 38750661 PCT