Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1927 ATGGAGAAGAAGGAGATGGCTGTGAAGACTGAGGATGCGGTTGGGTCCTCTTCCTTCCCTTGTTACAATTCAAACGTTTATCCATTCTCGAGCGCGTTTGATTTCTCTGAGGTGGAAAAGAGATCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTATAGTCCTCTGCTTGAGTTACCTCAACTTTCAACTGTGTCTGTGCCTCATCACTCTACAGTACTAGTTAAGGTTCCATCTGATAACGGGAAAGAGTGTTCCGAGGTGTTGAACCACCAACCTGCCACTCCAAACTCTTCTTCCATTTCATCTGCATCCAGTGAGGCAGTCAATGATGAACAGAATAAGACTCTAGACCAAGCAGAAGAAGAGGTTCTAAGATTTGATGGTTTCTGGGATCTGGTTCTTATTGGGTTTAGGTTGAAGCCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTACAGATGGAGAAAGTACGGTCAAAAGGCCGTGAAAAACAGCCCCTTTCCCAGGAGCTATTATCGTTGCACCAGTGTTTCATGTAATGTGAAGAAGCGCGTGGAGCGATCTTTCACTGATCCAAGCGTTGTAGTGACGACCTATGAAGGCCAACACACACATTCAAGCCCAGTCATGCCCCGCTCAGGTGTCTCATCTGGATACACCACCAACTTCGGTTCAGTTTTGCCACCGGGAAACTACTTATCCCAGTAtcagcaccaccaccaccaccacccccaccaccatcaacaacaacttattGTCAACACATTGTCCTCTTTGGGTTTCCCTTACAATGATTCTTCATCTCCAAAGAACGCTGGTTTTACTCAAGAGAGATGGCTTTGTAATCCAGGGACGAATGCATTTTTGAGGGACCATGGGCTTCTTCAGGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG 981 0.4353 MEKKEMAVKTEDAVGSSSFPCYNSNVYPFSSAFDFSEVEKRSLGFMELLGVQDYSPLLELPQLSTVSVPHHSTVLVKVPSDNGKECSEVLNHQPATPNSSSISSASSEAVNDEQNKTLDQAEEEVLRFDGFWDLVLIGFRLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSVVVTTYEGQHTHSSPVMPRSGVSSGYTTNFGSVLPPGNYLSQYQHHHHHHPHHHQQQLIVNTLSSLGFPYNDSSSPKNAGFTQERWLCNPGTNAFLRDHGLLQDVVPSHMLKEE 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1927 326 MobiDBLite consensus disorder prediction 89 114 - -
Ssu7g1927 326 PIRSF WRKY_txn_fact_IIc 1 326 IPR017396 GO:0003700
Ssu7g1927 326 SMART WRKY_cls 167 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1927 326 Coils Coil 104 124 - -
Ssu7g1927 326 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 318 IPR044810 GO:0003700
Ssu7g1927 326 MobiDBLite consensus disorder prediction 89 116 - -
Ssu7g1927 326 Pfam WRKY DNA -binding domain 168 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1927 326 ProSiteProfiles WRKY domain profile. 162 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1927 326 Gene3D WRKY domain 152 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g1927 326 PANTHER WRKY TRANSCRIPTION FACTOR 1 318 - -
Ssu7g1927 326 SUPERFAMILY WRKY DNA-binding domain 159 227 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1927 Ssu-Chr7 38567078 38568769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1927 27 326 WRKY Transcription Factor Family AT2G47260 44.818 8.49e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu7g1927 WRKY 5.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1927 - - aprc:113872234 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1927 7 38567078 38568769 Ssu7g1927 7 38567078 38568769 ECH
Ssu4g0564 4 8948977 8950317 Ssu7g1927 7 38567078 38568769 PCT