Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1918 ATGCACTTCACTGATATTTTAACTTACAATATACAGCCTGGTCTTGAAATTGTGGTAATGCTTGCATTGCCGATTGCCATGGTTCCCAAATCCCATTTCCAagtcattattatatttcttctttcatcGTTATACATTACTTCTAGCTCCGATATACATACACAGGCCGATTTTGACAAGTGGGTATCTTGGAACGTCGAGAATTATTATCAGAAAAAGACCATTTTGGAAGCCAAATGGAAGGTGGCTGCACCTGGCCCAGATTTGAAGCTGATGCAGGCTGAGAGTAACAAAGTTAGAATAACAGTTAGCCAATACGGTGCTCGTGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCATTCCACCACGTAACACTAGGAGAGTTGTAGTGTCGATCGCACCGGGTGTTTATagGGAGAAGGTAATGATCCCCAGAACATTGCCTTTTATTACATTGTTAGGGGACGCCGGGGATCCACCAACCATTACTGGAAATGATACAGCGTCTGCCACCGGAAGAGATGGGACTCCGTTAGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTATTTTGTGGCCATCAACATAAAATTTGAGAACACTGCTCCGCATGTCATTGGAACGAGGGGGGAACAAGCCGTGGCGCTTCGTATCTCAGAAACCAAAGCTGCTTTTTACAATTGCACTTTCTATGGGGCTCAAGACACTCTATATGATCACAAAGGCCTTCATTACTTCAACAACTGCTCTATTCAAGGTTCTGTGGATTTCATCTTCGGTTCTGGGAGATCCCTTTATGAGAATTGCTATCTAAGTTCCACAACCAAGAAGGTGGCTTCCATCACTGCTCAAAAGCGTACAAATTCGTCATTGGAGAGTGGATTCTCGttcaaaaattgcacaataacaGGTAGTGGGCAGGTTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTATTTTCTCCTACACCTACATGGACAATATAGTTCTCCCCAAAGGATGGAGTGATTGGGGTGACCAGAAGCGTGACTCGAGAGTATATTATGGAGAATACAAATGTAGTGGGCCAGGAGCTAACGTGGCTGGAAGAGTGCCATGGGCACGGGTGCTTAAGGACGAAGAGGCCAAACCTTTTATTGGGATTCAATTCATCGAAGGGGACTCTTGGCTCATGAGCCCCTAA 1200 0.435 MHFTDILTYNIQPGLEIVVMLALPIAMVPKSHFQVIIIFLLSSLYITSSSDIHTQADFDKWVSWNVENYYQKKTILEAKWKVAAPGPDLKLMQAESNKVRITVSQYGARGDFKTITEALNSIPPRNTRRVVVSIAPGVYREKVMIPRTLPFITLLGDAGDPPTITGNDTASATGRDGTPLGTFQSATVAVDASYFVAINIKFENTAPHVIGTRGEQAVALRISETKAAFYNCTFYGAQDTLYDHKGLHYFNNCSIQGSVDFIFGSGRSLYENCYLSSTTKKVASITAQKRTNSSLESGFSFKNCTITGSGQVYLGRAWGDYSRVIFSYTYMDNIVLPKGWSDWGDQKRDSRVYYGEYKCSGPGANVAGRVPWARVLKDEEAKPFIGIQFIEGDSWLMSP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1918 399 Pfam Pectinesterase 101 393 IPR000070 GO:0030599|GO:0042545
Ssu7g1918 399 Gene3D - 95 398 IPR012334 -
Ssu7g1918 399 ProSitePatterns Pectinesterase signature 2. 255 264 IPR033131 -
Ssu7g1918 399 SUPERFAMILY Pectin lyase-like 100 396 IPR011050 -
Ssu7g1918 399 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 46 397 - -
Ssu7g1918 399 PANTHER PECTINESTERASE 46 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1918 Ssu-Chr7 38407303 38412192 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1918 101 396 Carbohydrate Esterase AT5G47500 47.651 2.44e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1918 K01051 - cit:102614801 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1918 7 38407303 38412192 Ssu7g1918 7 38407303 38412192 ECH
Ssu4g0945 4 15064497 15070681 Ssu7g1918 7 38407303 38412192 PCT