Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1917 ATGGAGACTATCAGTGTTGAGGTGATGAGAAGCTTATCAGATTGTGACTCATATAGAAGTGAAGAAGAGATGGTTAAGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTGATCAACTATGTCAACGTCCACGGTGAAGGTCACTGGAACTCCCTCGCTCGCTCTGCAGGTCTAAAGCGAACGGGCAAAAGCTGCAGACTACGATGGTTGAACTACTTGCGTCCGAATGTTCGACGTGGGAACATCACCCTTCAAGAACAGCTCTTGATTCTCGACCTCCATTCCCGCTGGGGCAATCGGTGGGCTAAGATAGCAGAACAATTGCCTGGGAGAACAGACAACGAGATAAAGAACTATTGGAGGACGAGAGTGGTGAAGCAGGCGAAGCAACTCAAATGTGATGTAAACAGCAAACAGTTCAGGGACGCCTTGCGTTTTGTTTGGATGCCACGCCTTATGGAGCGGATTCAGGCTTCTTGCAGGAATGgcccttcttcttcttgctaTGGCCTTGACCAAACCACCCTGTGCAACACTCAGGTCCACAGTGAATCTAGTGGGGCCAATCCCATCATGTTTTGTGACAACTCCGTGGCTTCATTGTACTCATCAGGGGTTGAAGTTCAGCCTCCCTCTCTCTCTGACACAAATACAAGCGGATCTTACAATTTAATGGGTGATGGTAGCTCTGAAATCCAAGCATTTGAACCATGCAATGGTTTTGGTGACGCGGACTTGTGGACCGATGAAAACATATGGTTCTTGCAGCAGCATCTTGCTGATGATTTTTGA 795 0.4667 METISVEVMRSLSDCDSYRSEEEMVKKGPWTEEEDSVLINYVNVHGEGHWNSLARSAGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWAKIAEQLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDALRFVWMPRLMERIQASCRNGPSSSCYGLDQTTLCNTQVHSESSGANPIMFCDNSVASLYSSGVEVQPPSLSDTNTSGSYNLMGDGSSEIQAFEPCNGFGDADLWTDENIWFLQQHLADDF 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1917 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 129 IPR017930 -
Ssu7g1917 264 SMART sant 79 127 IPR001005 -
Ssu7g1917 264 SMART sant 26 76 IPR001005 -
Ssu7g1917 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 257 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu7g1917 264 SUPERFAMILY Homeodomain-like 26 121 IPR009057 -
Ssu7g1917 264 Gene3D - 24 80 - -
Ssu7g1917 264 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Ssu7g1917 264 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Ssu7g1917 264 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Ssu7g1917 264 Gene3D - 84 125 - -
Ssu7g1917 264 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Ssu7g1917 264 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 17 257 - -
Ssu7g1917 264 CDD SANT 84 123 IPR001005 -
Ssu7g1917 264 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 78 IPR017930 -
Ssu7g1917 264 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1917 Ssu-Chr7 38396344 38397354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1917 21 263 MYB Transcription Factor Family AT2G47190 50.000 4.05e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1917 Myb_DNA-binding 3.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1917 K09422 - gmx:100777932 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1917 7 38396344 38397354 Ssu7g1917 7 38396344 38397354 ECH
Ssu4g0553 4 8761874 8762911 Ssu7g1917 7 38396344 38397354 PCT