Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1916 ATGGATGTTAAGAAAGGTAGGTCCACAGTACAGACACAGGTGCAGGTTCAGCATAATGAAAACGAGATGGGCCTCAGAAAAGGTCCATGGACGGTTGACGAGGACACCGTTCTCGTCAATTACATCGCCACCCACGGTGAAGGTCATTGGAATTCCGTGGCACGATGTGCAGgTTTAAGAAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAACTATTTGCGCCCCGATGTGCGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTCGACCTTCACTCTCGGTGGGGCAATAGGTGGTCGAAGATTGCTCAGCACCTGCCAGGAAGAACTGATAATGAAATAAAGAACTATTGGAGGACCAGAGTGATAAAGCAGGCTAAGCAGCTCAAGTGCGATGTGAACAGCAAACAGTTCAGAGACACGTTGCGTTACGTGTGGATGCCCCGCTTGCTGGAGCGGGTTCAGCCCACATCGCAAGCTCTCGAGCTACAACTGGACCCAAACCCAAGCGGAGTTGGGGCCTTTCTTCACCAAAACGGGTTACACGGTTCAGATTCGGGAACAGAGTGGGCAAAACCGAACCACTCCTCCTGTGCCACCGGTTCTTACTCGGACTCATCATCTATGGAGTTCCAAGTTCCTTCGAATTCGGACCATAGCGATTCTTCGGGCCACGATGTTTCGGTCCATAGAATTGAAAAGGGGTTGGATCTGTGGCCAGGTTTCAATAACCAGATGTTGGAACAAGGGAGTGGTGGTAACGGTGGCGGCGACACGCTAGAAAGTTTGTGGAATGACGAGAGTATGTGGTTTTTGCAACAACTTTCTGATGACCTcgaaataaaatacaattccCTTCCGTGA 873 0.4845 MDVKKGRSTVQTQVQVQHNENEMGLRKGPWTVDEDTVLVNYIATHGEGHWNSVARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERVQPTSQALELQLDPNPSGVGAFLHQNGLHGSDSGTEWAKPNHSSCATGSYSDSSSMEFQVPSNSDHSDSSGHDVSVHRIEKGLDLWPGFNNQMLEQGSGGNGGGDTLESLWNDESMWFLQQLSDDLEIKYNSLP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1916 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Ssu7g1916 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Ssu7g1916 290 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Ssu7g1916 290 Gene3D - 84 125 - -
Ssu7g1916 290 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Ssu7g1916 290 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Ssu7g1916 290 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 281 IPR044676 GO:0003700|GO:0006355|GO:0043565
Ssu7g1916 290 SUPERFAMILY Homeodomain-like 24 121 IPR009057 -
Ssu7g1916 290 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Ssu7g1916 290 SMART sant 26 76 IPR001005 -
Ssu7g1916 290 SMART sant 79 127 IPR001005 -
Ssu7g1916 290 MobiDBLite consensus disorder prediction 187 230 - -
Ssu7g1916 290 MobiDBLite consensus disorder prediction 187 225 - -
Ssu7g1916 290 CDD SANT 84 123 IPR001005 -
Ssu7g1916 290 Gene3D - 27 79 - -
Ssu7g1916 290 PANTHER MYB TRANSCRIPTION FACTOR 1 281 - -
Ssu7g1916 290 CDD SANT 29 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1916 Ssu-Chr7 38332451 38333655 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1916 25 160 MYB Transcription Factor Family AT1G48000 76.471 9.31e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1916 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1916 K09422 - gmx:778065 377.096