Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1911 ATGAGGCATTCTAATATTTTACCACTAGTATTctccttatattttctttctttatttcttcctaCCCAAGCTAGGCACCATTTCCATACAAAACACAAGCACTCACGTTATCACAATTCACCTGAAATTTCACCATCTCCTGCTCCACTGTCTGCACCTTCTAGCGCTCCAGATGAAGCTCCTAGTCCTAGCCCCACTGGTAACGAGAACTACCATAATGCATCTAATTTATTCGATGTACGATCATTTGGGGCCATTGGAGATGGAATAACTGATGATACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGAATCAGCGGTTAACGTTATCCTTGTTCCCCATGGTTTCTCCTTCATTATTCAATCTACAATTTTCACAGGTCCTTGTCAAGGTGGTTTAGTACTAAAGGTTGATGGCACTATTATGCCACCTGATGGACCTGAATGTTGGCCAAAGAACAACAGTAGGCGTAATTGGCTTGTCTTTTTTAGAATCAATGGAATGTCACTTGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTCATGGGACAACATCTCCAGGACCTTGTGACAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCCAACTTGACTGTACAAGGACTTAGGATCAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGTTGCGAAAGTGTCCACGTGGAATCAATCTACATAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGATGTGAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATCACTTGTGGACCTGGTCATGGGATtagcATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACGGTGAGGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGTAATATTCACATGGAAAGTGTAAGGAATCCCATTATAATTGACCAGTTTTACTGCCTCACTAAGGATTGCGCTAACAAGACCTCTGCAGTCTTTGTAACGGATATACTTTACACTAACATAAAGGGAACGTATGATATGAGGCACCCACCTATGCGTTTTGCCTGCAGTGACTCTGTCCCATGCACCAACTTGACTCTCTCAGATATTGAGCTTCTTCCCGCTCAAGGAGACATAGTGCTTGATCCTTTCTGCTGGAGTGCCTATGGAAATTCCGAGACACTGACCATTCCCCCAGTCTCTTGCTTGCTCGAAGGCCTTCCTCAGTCCATTTCAGGCAGTGACATAGATCATTGCTGA 1425 0.4288 MRHSNILPLVFSLYFLSLFLPTQARHHFHTKHKHSRYHNSPEISPSPAPLSAPSSAPDEAPSPSPTGNENYHNASNLFDVRSFGAIGDGITDDTESFKMAWDTACQSESAVNVILVPHGFSFIIQSTIFTGPCQGGLVLKVDGTIMPPDGPECWPKNNSRRNWLVFFRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLTKDCANKTSAVFVTDILYTNIKGTYDMRHPPMRFACSDSVPCTNLTLSDIELLPAQGDIVLDPFCWSAYGNSETLTIPPVSCLLEGLPQSISGSDIDHC 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1911 474 Gene3D - 62 459 IPR012334 -
Ssu7g1911 474 PANTHER - 8 464 - -
Ssu7g1911 474 Pfam Glycosyl hydrolases family 28 109 427 IPR000743 GO:0004650|GO:0005975
Ssu7g1911 474 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 8 464 - -
Ssu7g1911 474 ProSitePatterns Polygalacturonase active site. 298 311 IPR000743 GO:0004650|GO:0005975
Ssu7g1911 474 SUPERFAMILY Pectin lyase-like 74 462 IPR011050 -
Ssu7g1911 474 SMART pbh1 291 311 IPR006626 -
Ssu7g1911 474 SMART pbh1 268 289 IPR006626 -
Ssu7g1911 474 SMART pbh1 321 342 IPR006626 -
Ssu7g1911 474 SMART pbh1 241 267 IPR006626 -
Ssu7g1911 474 SMART pbh1 350 371 IPR006626 -
Ssu7g1911 474 MobiDBLite consensus disorder prediction 30 71 - -
Ssu7g1911 474 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1911 Ssu-Chr7 38235268 38237357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1911 77 474 Glycoside Hydrolase AT1G02460 73.067 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1911 - - gmx:100792285 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1911 7 38235268 38237357 Ssu7g1911 7 38235268 38237357 ECH
Ssu7g1911 7 38235268 38237357 Ssu4g0546 4 8546845 8549128 ECH
Ssu6g0288 6 4515833 4519047 Ssu7g1911 7 38235268 38237357 ECH
Ssu4g0546 4 8546845 8549128 Ssu7g1911 7 38235268 38237357 PCT