Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1901 ATGGAAGCTAGATTTGGTGCTGAGGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGGTGTGGGGAAGAGGTCCTCAGAGTGGGATGTGAATGACTGGAGATGGGATGGAGATCTTTTCATTGCTAGCCGGCTGAATCCGGTGCCAGCAGATGGTGTGGGAGTGGGACAGCAATTTTTCCCTCTTGGGTCTGGGATCCCGGTGGCTGGAGGTCCCTCCAACAGTTCTTCCTGCTCTGAGGAAGTAGATCTCAGGGATCCCAAGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTGCTCGAGGATGATGGTTTGAACGAGGAGGCCGGTACCCTTAGCTTAAAGCTTGGTGGACATGCTTCTACAGTGGTGGATAGGGAAGTTGCGAGCTGGGATGGTACGAATGGAAAGAAAAGTAGAGTAGCTGGAAGTACTTTGAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGGCATAAAGTTTGTGAGATGCACTCCAAGGCCAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGATTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAGGAATTTGATGAAGGGAAGAGAAGCTGTCGAAGACGCTTGGCAGGCCATAATAAACGTAGAAGGAAAACCAATCATGAAGCTGTTCCGAATGGAAGTTCATTAAATGATGATCAGACTAGCGGTTATCTgttgataagtttattgaagaTACTTTCAAATATGCATTCTGACAGGTCAGATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAAGAGTCTTGCTAGTCAGAATGGTGAGCAAGGGGGCGTGAACATATCTAACCTTTTGCGAGAACCAGAGAATTTATTGAGAGAAGGGGGTTCATCAAGGAAGTCAGAGATGGTGTCAACTTTATTTTCCAATGGTTCTCAAGGCTCTCCAACTGTTACAAGACAACATGAAACTGTATCTATGGCTAAAATGCAGCAACAAGTGATGCATGCCCATGATGCTAGGCCTGCTGATCAGCAAATCATGTCTTCTATAAAGCCCAGCGTTTCAAACAGTCCTCCGGCCTACTCAGAAGCGAGAGACAGTACTGCTGGACAGATcaagattaataattttgatttgaatgaCATATATATTGACTCAGATGATGGTATGGAAGATTTAGAAAGATTGCCCGTCTCTACAAATCTTGTGACTAGCTCTCTTGATTACCCTTGGACACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCTCCTTCTAGTTCCAGTGGAGAAGCCCAGAGTCGCACTGATCGAATTGTTTTTAAGCTCTTCGGCAAAGAGCCAAATGATTTTCCTCTTGTGCTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATGGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGCTGGATGTCTCTGATGATACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTGTTAATGGTCAAGTTGTCATAGATACCTCCTTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCCAAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGACACGCCCTGCTACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATGTTTCAATGGATCAATACTCCAAAGAGCCTGATGATCTTCAGTGCATCCGGTTTTCATGTTCTGTCCCTGTGATAAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCagcttttttccttttattgttgCGGAGGAGGATGTTTGCTCAGAAATCTGTGCACTTGAGCCTCTTCTAGAATTATGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAATCAAGCCATGGATTTTATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAGTTGAAATTAAGGATGGTTCACTTGAACTCTAGTGTGGATCTCTTTTCATTGAAACGGTTCAAATGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTTCTGTAGTGAAAAAGCTGTTGAACCTACTGCTTGATGGCACTGTGAATACAGGAGATCATCCTTCCCTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAAAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGTTGCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAACTAGGACCTGAAGACAAGGCACTAGTTGATGGAGAGAATCAGACCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCCGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCACGGTGGGAATTGAAGCATGGAAGAATGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGTGGCCATTATGCTTACATTCACTTGGtgcagaaaaaaattaacaagagaCAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCAGCAATACGACAGATAGCAATACAAACCAGAAGCAAAATGAGTCATCCACTAGCTTTGAGATTGGTAAGGCTGAAGCAAGGCTTAGCCAAGGGCACTGTAAACTTTGTGTCAATAAATCTTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCAATGCTCTCAATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCCGAAGTTATATGTATGTTCCGACCCTTCAGGTGGGAAACATTGGACTTTGGAACAAGCTAA 3042 0.4326 MEARFGAEAYHFYGVGASSDLRGVGKRSSEWDVNDWRWDGDLFIASRLNPVPADGVGVGQQFFPLGSGIPVAGGPSNSSSCSEEVDLRDPKGNKEGDKKRRVIVLEDDGLNEEAGTLSLKLGGHASTVVDREVASWDGTNGKKSRVAGSTLNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSGYLLISLLKILSNMHSDRSDQTTDQDLLTHILKSLASQNGEQGGVNISNLLREPENLLREGGSSRKSEMVSTLFSNGSQGSPTVTRQHETVSMAKMQQQVMHAHDARPADQQIMSSIKPSVSNSPPAYSEARDSTAGQIKINNFDLNDIYIDSDDGMEDLERLPVSTNLVTSSLDYPWTQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIVNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLTRPATRLMCALEGKYLVCEDAHVSMDQYSKEPDDLQCIRFSCSVPVINGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICALEPLLELCETDPDIEGTGKIKAKNQAMDFIHEMGWLLHRSQLKLRMVHLNSSVDLFSLKRFKWLIEFSMDHDWCSVVKKLLNLLLDGTVNTGDHPSLYLALSEMGLLHKAVRRNSKQLVELLLRYVPENISDKLGPEDKALVDGENQTFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCTVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRQGAAHVVVEIPSNTTDSNTNQKQNESSTSFEIGKAEARLSQGHCKLCVNKSSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWETLDFGTS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 221 242 - -
Ssu7g1901 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Ssu7g1901 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1012 - -
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 312 334 - -
Ssu7g1901 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Ssu7g1901 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Ssu7g1901 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1012 IPR044817 GO:0003677
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 306 334 - -
Ssu7g1901 1013 SMART ANK_2a 839 869 IPR002110 GO:0005515
Ssu7g1901 1013 SMART ANK_2a 782 812 IPR002110 GO:0005515
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 425 459 - -
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 84 99 - -
Ssu7g1901 1013 MobiDBLite consensus disorder prediction 73 99 - -
Ssu7g1901 1013 SUPERFAMILY SBT domain 154 234 IPR036893 GO:0003677|GO:0005634
Ssu7g1901 1013 Gene3D - 754 916 IPR036770 -
Ssu7g1901 1013 SUPERFAMILY Ankyrin repeat 783 897 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1901 Ssu-Chr7 38103519 38111001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1901 1 1013 SBP-box Gene Family AT3G60030 54.272 0.0 973
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu7g1901 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1901 - - gmx:100809806 1883.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1901 7 38103519 38111001 Ssu7g1901 7 38103519 38111001 ECH