Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1899 ATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGTTGCTTGGATATTGCATTGATGGAAGCTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCAGTTTTGACATGGGCACAAAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGACTTGAATACTTGCATGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGCTAATCTTTGACGATGATGTTgctaaaattgcagattttgaTTTATCAAATCAGGCTCCTGACATGGCTGCACGTCTTCATTCTACTCGTGTCCTTGGAACTTTTGGTTATCATGCTCCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTCGGCGTTGTCCTTCTGGAACTTCTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCCAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCACTCTGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTATTGACTGCACGACCTGGACCTGCCGGTGAAACACCAAATTAA 744 0.4261 MVSRLKHENFVQLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETPN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1899 247 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Ssu7g1899 247 SMART serkin_6 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1899 247 PIRSF ILK 1 238 - -
Ssu7g1899 247 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 245 - -
Ssu7g1899 247 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 245 - -
Ssu7g1899 247 Gene3D Transferase(Phosphotransferase) domain 1 31 239 - -
Ssu7g1899 247 SUPERFAMILY Protein kinase-like (PK-like) 2 231 IPR011009 -
Ssu7g1899 247 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g1899 247 Pfam Protein tyrosine and serine/threonine kinase 2 231 IPR001245 GO:0004672|GO:0006468
Ssu7g1899 247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 81 93 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1899 Ssu-Chr7 38073565 38075402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1899 1 238 Receptor kinase-like Gene Family AT3G58690 52.301 8.12e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu7g1899 PK_Tyr_Ser-Thr 6e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1899 K13436 - gmx:100808383 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1899 7 38073565 38075402 Ssu7g1899 7 38073565 38075402 ECH
Ssu4g0535 4 8404250 8406725 Ssu7g1899 7 38073565 38075402 PCT