Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1898 atgttgaaAGGAAAAGTACTTATCTCTGGTGTTTCCCTCATCCTCGTGGTGGGTGTTGCCATCGGTGTTGTGGTTGTCGTTAACAAAAAGGATTCAACTGATCCTGATGTAGCAACTCACCAAAAGTCCGTGAAAGCGATGTGTGAAGGCACAGAAGACCCTAAGCTTTGTCACGATACTCTTAGCAATATGCAACAAGGAGAAGCAGCCCCACCAAACGCAGTAGTTGCCCAGGACGGTAGTGGTCAGTTCAAAACCATCAATGACGCTATTGCCTCCTACCCTAAGAATTTCAAAGGCagatttgttatttatgttaaGGCTGGTGTCTATGACGAGTACATCACCATTCCTAAGAAGTCAGAGAATATTCTGATATACGGTGATGGCCCTGCAAAGACCATTGTTACAGGTCACAAAAACTATGTAGATGGCGTCAAGACAATGCAAACTGCCACCTTCGCCAATACCGCACCTGGATTCATCGCAAAGGCAATGGCATTCGAGAACACGGCTGGTGCCAGTAAGCACCAGGCAGTGGCATTCAGAAACCAGGGAGACATGTCGGCACTCTTCGACTGCGCCATGCGCGGTTACCAAGACACATTGTACGTTCAGGCGAACCGTCAGCTCTACCGCAACTGCGAAATCTCTGGCACCGTGGACTTCATCTTCGGTGCGTCCGCAGCCCTGATCCAGAACTCTAGAATCATCGTGAGGATGCCAGACCCTAAACAATTCAACACAGTGACTGCAGATGGGACGAAGCAGAGGAACATGGCCACAGGGATTGTGATCCAGAACTGCGAGATAGTCCCAGAGAAGGCTCTGTACCCTTCGAGGTTTGAAGTTAAATCGTACCTGGGGAGGCCGTGGAAGGATTACGCGAGAACAGTGATCATGGAATCAAACATAGGTGACTTTATTCAGCCAGAAGGGTGGAGTGTTTGGAGCGGGGACCAATATCTTACCACGTTGTACTATGCTGAGTATGCTAACGTTGGACCTGGTTCAAACGTTCAAGGAAGGGTCAAGTGGAAGGGTTACCATCCCAACATTGATAAGAATGAAGCCGCGCAATTCACTGCTGGCCAGTTCCTCAGAGCTGGACCTTCAGGAAATGCTGATGATTGGTTGAAGGCCACGGGTGTTCCTTACACCATTGGTTTCGCCAAACCTTGA 1182 0.4831 MLKGKVLISGVSLILVVGVAIGVVVVVNKKDSTDPDVATHQKSVKAMCEGTEDPKLCHDTLSNMQQGEAAPPNAVVAQDGSGQFKTINDAIASYPKNFKGRFVIYVKAGVYDEYITIPKKSENILIYGDGPAKTIVTGHKNYVDGVKTMQTATFANTAPGFIAKAMAFENTAGASKHQAVAFRNQGDMSALFDCAMRGYQDTLYVQANRQLYRNCEISGTVDFIFGASAALIQNSRIIVRMPDPKQFNTVTADGTKQRNMATGIVIQNCEIVPEKALYPSRFEVKSYLGRPWKDYARTVIMESNIGDFIQPEGWSVWSGDQYLTTLYYAEYANVGPGSNVQGRVKWKGYHPNIDKNEAAQFTAGQFLRAGPSGNADDWLKATGVPYTIGFAKP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1898 393 PANTHER PECTINESTERASE 68 390 - -
Ssu7g1898 393 PANTHER PECTINESTERASE 4 67 - -
Ssu7g1898 393 SUPERFAMILY Pectin lyase-like 69 389 IPR011050 -
Ssu7g1898 393 Pfam Pectinesterase 73 368 IPR000070 GO:0030599|GO:0042545
Ssu7g1898 393 PANTHER PECTINESTERASE 68 390 - -
Ssu7g1898 393 Gene3D - 68 390 IPR012334 -
Ssu7g1898 393 ProSitePatterns Pectinesterase signature 2. 217 226 IPR033131 -
Ssu7g1898 393 PANTHER PECTINESTERASE 4 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1898 Ssu-Chr7 38066649 38069794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1898 68 390 Carbohydrate Esterase AT2G26450 49.074 1.85e-107 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1898 K01051 - gmx:100775246 595.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0529 4 8347687 8348415 Ssu7g1898 7 38066649 38069794 PCT