Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1897 atggaaaaaaaaacgACACTCGTCTCTGCTGTTTCTCTGATTCTCGTAGTGGGCGTTGCCCTGGGCGTTGTTGCTTTTGTCTCCACCAACCAAAACGGCACCGGCAGTGGTGGAAACGACAACACGGGTGAAGTGACCACCCACCGACGGTTGCAGAAGATTTCATTGCGAAGTCGATGGCGTTCGAGAACACTGCTGGTGCGAGCAAACACCAAGCAGTGGCGCTTCGCGTGCAAGGTGATCGCTCGGCCTTCTTCAACTGTGCCATGCACTGGTTTTCAGGACACACTATACGCGCACGCACACCGTCAGTTTTACCGGAACTGCGAAATCTCTGGTACCGTGGATTTCATTTTCGGTTACAGCACCACCTTGATCCAGAGCTCCAAGATCATAGTGCGGAAGCCAGACCCGAATCAGCAAAACATAGTAGTAGCCGACGGCACGGACCAAAAGAACATGCCGACCGGCGTTGTGCTTCAGAACTGCGAGATCGTGCCAGAGGCGGAGCTGGTCCCGGACAAGTTGGCGGTGAGGTCGTACTTGGCGAGGCCGTGGAAGGCATATTCGAGGGCCATCTTCATGGAGAACACTATCGGCGATCTCATTCAGCCAGACGGGTTTCTTCCGTGGCAAGGCAATCAGTTCCTTGACACGTGTTTCTTTGCTGAGTATGCTAACACTGGCATGGGTGGCAATGTTGAACGTAGGGTCAAGTGGAGTCGTGGGGTCCTTACCAAGGGTGACGCTGCCAAATACACTGCTGACCAATGGCTCCAAGCCAACACGTGGTTGCCCGCCACCGGCATACCTTTCGATCTTGGCCTCACTAAAGCTTGA 840 0.5357 MEKKTTLVSAVSLILVVGVALGVVAFVSTNQNGTGSGGNDNTGEVTTHRRLQKISLRSRWRSRTLLVRANTKQWRFACKVIARPSSTVPCTGFQDTLYAHAHRQFYRNCEISGTVDFIFGYSTTLIQSSKIIVRKPDPNQQNIVVADGTDQKNMPTGVVLQNCEIVPEAELVPDKLAVRSYLARPWKAYSRAIFMENTIGDLIQPDGFLPWQGNQFLDTCFFAEYANTGMGGNVERRVKWSRGVLTKGDAAKYTADQWLQANTWLPATGIPFDLGLTKA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1897 279 PANTHER PECTINESTERASE 91 277 - -
Ssu7g1897 279 PANTHER PECTINESTERASE 3 38 - -
Ssu7g1897 279 Gene3D - 26 276 IPR012334 -
Ssu7g1897 279 PANTHER PECTINESTERASE 3 38 - -
Ssu7g1897 279 Pfam Pectinesterase 90 261 IPR000070 GO:0030599|GO:0042545
Ssu7g1897 279 ProSitePatterns Pectinesterase signature 2. 111 120 IPR033131 -
Ssu7g1897 279 SUPERFAMILY Pectin lyase-like 89 275 IPR011050 -
Ssu7g1897 279 PANTHER PECTINESTERASE 91 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1897 Ssu-Chr7 38045808 38048613 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1897 92 272 Carbohydrate Esterase AT3G06830 48.634 3.78e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1897 K01051 - gmx:100820142 360.147