Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1895 atgaaagccaAAATACTCAGCTCCGCAGTTTCTCTCATCCTTGTGGTGGGTGTTGTCATTGGCGTCGTTGCTGTCGTTCATAGCCCAAAGGGCAACAACAACGCTACTACTGCTAATGATTTCATTGCCAAGAAAATTGGATTTGAGAACACGGCTGGTCCAGAAGGACATCAAGCAGTGGCACTTCGTGTGCAAGGTGATCGTTCGGCATTCTTCGATTGCTCATTACGTGGTTACCAAGACACACTGTACGCCCATGCCCACCGTCAGTTCTACCGCAACTGCGAAATCTCAGGAACAATCGATTTCATCTTTGGCTACTCCACCGCCTTGATCCAGAACTCCAAGATCATAGTGAGGAAGCCCTTGCCAAATCAACATAACATAGTGGTGGCCGATGGCAGAGACCAAAAGAGCCTGCCCGGTGGAATAGTCCTCCACAACTGTGAGATCATGCCTGATCCTACCCTCTTCGCTGACCGCTTGGCCGTGAAAACCTACTTGGCTAGGCCATGGAAGGCATTCTCAAGGGCAGTGTTCATTGAGAATGTTATCGGTGACTTGATTCAACCAGAAGGCTATATTCCATGGAGCCCAGTTGAACCAAACACTGAGAATTGTTACTTCGCTGAGTTTGGCAACACTGGTCCAGGTGCTGCTGCTCAAGCAAGGGCCAAGTTTGGCAAAGGTCTCATTAGTAAGGAGGAGGCCACAATATTCACTCCTGAACCTTTTCTCCAAGCTAGCACTTGGTTGCCTGCCACTAGCATTCCTTTCGATCCTAGCTTCACCAAAGCCTAA 801 0.4844 MKAKILSSAVSLILVVGVVIGVVAVVHSPKGNNNATTANDFIAKKIGFENTAGPEGHQAVALRVQGDRSAFFDCSLRGYQDTLYAHAHRQFYRNCEISGTIDFIFGYSTALIQNSKIIVRKPLPNQHNIVVADGRDQKSLPGGIVLHNCEIMPDPTLFADRLAVKTYLARPWKAFSRAVFIENVIGDLIQPEGYIPWSPVEPNTENCYFAEFGNTGPGAAAQARAKFGKGLISKEEATIFTPEPFLQASTWLPATSIPFDPSFTKA 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1895 266 ProSitePatterns Pectinesterase signature 2. 97 106 IPR033131 -
Ssu7g1895 266 Gene3D - 21 265 IPR012334 -
Ssu7g1895 266 PANTHER PECTINESTERASE 35 263 - -
Ssu7g1895 266 Pfam Pectinesterase 34 248 IPR000070 GO:0030599|GO:0042545
Ssu7g1895 266 PANTHER PECTINESTERASE 35 263 - -
Ssu7g1895 266 SUPERFAMILY Pectin lyase-like 32 260 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1895 Ssu-Chr7 38027511 38029530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1895 35 263 Carbohydrate Esterase AT5G49180 45.652 1.39e-72 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1895 K01051 - gmx:100808559 413.305