Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1891 ATGGGCGTGGAGAATGGGGAAGAGAAAAAACATGATGACGCAAGCACGTCAGAGAATCTTGCAGAAACCAGCACGAGGggggaaaaggaagagaaaaaaaaacaaaaggaaaaacctGAGACAGTTCCATTTCACAAGCTGTTCGCTTTTGCAGACTCCACTGACATTCTCTTGATGGCTGTTGGGACCATTGGTGCCATTGGAAATGGAATGGGTTTGCCTCTCATGACGTTGCTGTTCGGTCAAATGATTGATAGCTTCGGCAGTAACCAGCGAAACTCTAACGTAGTGGAAGAAGTATCCAAGGTTTCTCTTAAATTTGTGTACTTGGCAATAGGATCTGGGACGGCAGCATTTCTCCAGGTGTCTTGTTGGATGGTCACGGGGGAGAGACAGGCTGCACGGATAAGGGGATTATATTTGAAAACTATTCTAAGACAAGATGTTACTTTCTTTGATAAGGAAACAAACACCGGAGAGGTGATAGGGAGGATGTCAGGTGACACAGTTCTCATACAAGATGCCATGGGTGAGAAGGTTGGGAAATTTCTGCAGCTAATAGCAACATTCGTTGGGGGATTTGTTATAGCATTTGTCAAAGGGTGGCTTCTTACTGTTGTCATGTTGTCCACTCTTCCACTTCTTGCTGTGTCGGGTGCTGCTATAGCTGTTATCATAGGCAGGATGGCTTCTCGAGGTCAAACAGCTTATGCCAAAGCTGCACATGTGGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCTTCCTTTACCGGGGAAAAGCAAGCAGTATCTACTTATAGCAAATTTCTTATAGATGCTTACAAATCAGGAGTTCATGAAGGTTCCATAGCAGGAGTGGGTCTAGGCACAGTTATGTTTGTTATTTTCGGTGGTTATGCTTTGGCTGTATGGTTTGGCGCAAAGATGATAATGGAAAGAGGATATAATGGGGGCACAGTGATTAATGTGATTATTGCCGTGCTAACTGCTTCAATGTCTCTTGGACAGGCATCCCCTAGCATGAGTGCTTTTGCTGCAGGTCAGGCTGCAGCTTTCAAAATGTTTCAGACAATTGAAAGGAAGCCAGAAATAGATTCTTATGATCCAAATGGAAAAATATTAGAAGATATTGAAGGCGAAATAAAGTTAAGGGATGTTTATTTCAGTTATCCAGCCAGACCTGAGGAACTGATATTTGATGGATTCTCTCTTCATATACCTAGTGGTACGACTGCTGCATTAGTTGGACAAAGTGGAAGTGGAAAGTCTACGGTTATCAGCTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACCTGAAAGAATTTCAGCTTAGGTGGATCAGAGGAAAAATTGGCCTTGTTAGCCAGGAGCCGGTGTTGTTTGCATCTAGCATTAAGGATAACATTGCATATGGAAAGGAGGGAGCAACAATTGAAGAGATAAGATCTGCATCTGAACTTGCAAATGCTGCTAAATTCATTGATAAACTTCCACAGGGATTGAACACAATGGTTGGTGAGCATGGAACTCAGCTGTCTGGTGGACAGAAACAGCGCATTGCTATTGCAAGAGCAATCCTGAAAAATCCGAGAATTCTACTTCTAGATGAAGCCACAAGTGCACTTGACGCAGAGTCTGAAAGGATAGTGCAAGAGGCTCTAGACAGGATAATGGTCAACAGAACCACTGTTATCGTGGCACATCGCTTGAGCACAGTGAGGAATGCTGATATGATCGCTGTAATTCATAGAGGGAAAATGGTTGAGAAAGGAACACACTCAGAATTACTCAAGGATCCTGAGGGAGCTTACTCTCAACTTATACGCCTACAAGAAATAAACAAGGAGTCAGAAGAAAATGCAGACCATCACAAGAAGAGTGAACTTTCTGTAGAATCCTTTAGACAATCTAGTCAAAGGAGGTCACTTCAAAGATCTATTAGTAGAGGGTCATCCATAGGGAATAGTAGCCGCCACTCATTTTCGGTTTCCTTTGGTTTACCCACAGGAGTTAACGTGTCTGATCCTGAGCTTGAAAACTCACAACCCAAAGAACAAGCACCAGAGGTTCCACTCAGCCGCCTTGCTTCCCTCAACAAGCCAGAGATTCCAGTTCTTCTGATTGGATGTGTAGCTGCCATAGCAAATGGTGTTATACTTCCAATATTTGGTGTGCTGGTTTCTAGTGTCATCAAGACATTTTATGAACCATTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCACTGATGTTCATGGTCCTTGGTCTTGCATCATTTTTGATAATTCCTGCACGAGGATACTTTTTTGCTGTGGCAGGAAGCAAGTTAATCCAACGTATTAGGCTAATGTGTTTTGAGAAGGTTGTCAACATGGAGGTTGGTTGGTTTGATGAGCCTGGAAACTCAAGTGGTGCCATTGGTGCAAGGCTCTCAGCAGATGCTGCTTCTGTCCGTGCTCTTGTTGGTGATGCGCTGGGATTATTAGTTCAAAATTTAGCATCTGCATTGGCAGGTTTGATTATTGCTTTCGTTGCATCTTGGCAGTTGGCATTAATTATTCTTGTCCTGATTCCTCTTATTGGAGTAAATGGATATGTTCAAATGAAATTCATGAAGGGATTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGCCAAGTTGCTAATGATGCAGTTGGAAGCATAAGAACAGTTGCTTCTTTCTGTGCTGAAGACAAGGTTATGGAACTATACAGGAAGAAATGTGAGGGCCCCATGAAAACAGGAATACGACAAGGGTTGATCAGCGGATCAGGATTTGGAGTTTCATTTTTCTTACTATTTTGTGTTTATGCAACCAGTTTCTATGCAGGAGCTAGACTTGTTGACGCTGGGAAGACAACATTCTCAGCTGTTTTCCGGGTTTTCTTTGCGTTAACTATGGCAGCTATTGGAGTTTCCCAATCAAGCTCCATGGCTCCTGACTCAAGCAAAGCAAGGTCAGCTACTGCTTCCATATTTGGAATAATTGATAAGAAGTCAGTGATAGATCCGAGTGATGAGTCTGGTACCACACTGGATAGCGTTAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTCAAGTATCCGTCTAGACCTGATATACAGATTTTTCGAGACCTTAGCTTGGCTATCCACTCTGGCAAGACGGTGGCTCTTGTTGGTGAAAGTGGAAGTGGCAAATCCACAGTGATTGCCTTGTTGCAAAGATTTTATGATCCTGATTCAGGGCAAATCACACTTGATGGGATAGAAATTCGGGAGTTACAGCTCAAGTGGTTAAGGCAGCAAATGGGTCTTGTAAGCCAAGAGCCAGTATTGTTCAATGAAACTATACGTGCCAATATTGCTTATGGAAAAGGAGGCAATGCTACTGAAGGAGAAATCATAGCTGCGGCAGAATTGGCCAATGCCCATAAATTCATTAGTGGCTTACAACagGGTTATGATACTATAGTGGGAGAGAGGGGAACACAATTATCTGGTGGGCAGAAGCAACGAGTAGCAATTGCTCGTGCCATAATTAAAAGTCCAAAGATACTGCTACTAGATGAGGCTACAAGTGCATTAGATGCCGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAACAGGACCACTGTGGTTGTGGCACATCGTCTATCTACAATAAAAAATGCAGATGTGATTGCTGTTGTGAAAAATGGAGTTATAGTGGAGAAAGGAAAGCATGAAACACTCATTAACGTCAGTGGTGGATTTTATGCTTCCTTGGTCCAGCTTCACACAAGTGCCTCAACAGTATGA 3849 0.425 MGVENGEEKKHDDASTSENLAETSTRGEKEEKKKQKEKPETVPFHKLFAFADSTDILLMAVGTIGAIGNGMGLPLMTLLFGQMIDSFGSNQRNSNVVEEVSKVSLKFVYLAIGSGTAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVIGRMSGDTVLIQDAMGEKVGKFLQLIATFVGGFVIAFVKGWLLTVVMLSTLPLLAVSGAAIAVIIGRMASRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSTYSKFLIDAYKSGVHEGSIAGVGLGTVMFVIFGGYALAVWFGAKMIMERGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAFKMFQTIERKPEIDSYDPNGKILEDIEGEIKLRDVYFSYPARPEELIFDGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLNTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEINKESEENADHHKKSELSVESFRQSSQRRSLQRSISRGSSIGNSSRHSFSVSFGLPTGVNVSDPELENSQPKEQAPEVPLSRLASLNKPEIPVLLIGCVAAIANGVILPIFGVLVSSVIKTFYEPFDEMKKDSKFWALMFMVLGLASFLIIPARGYFFAVAGSKLIQRIRLMCFEKVVNMEVGWFDEPGNSSGAIGARLSADAASVRALVGDALGLLVQNLASALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGLISGSGFGVSFFLLFCVYATSFYAGARLVDAGKTTFSAVFRVFFALTMAAIGVSQSSSMAPDSSKARSATASIFGIIDKKSVIDPSDESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIAYGKGGNATEGEIIAAAELANAHKFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGKHETLINVSGGFYASLVQLHTSASTV 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1891 1282 PANTHER - 19 1278 - -
Ssu7g1891 1282 SMART AAA_5 409 601 IPR003593 -
Ssu7g1891 1282 SMART AAA_5 1064 1257 IPR003593 -
Ssu7g1891 1282 Pfam ABC transporter 1056 1205 IPR003439 GO:0005524
Ssu7g1891 1282 MobiDBLite consensus disorder prediction 625 640 - -
Ssu7g1891 1282 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 19 1278 - -
Ssu7g1891 1282 Pfam ABC transporter 401 549 IPR003439 GO:0005524
Ssu7g1891 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 60 347 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g1891 1282 CDD ABC_6TM_Pgp_ABCB1_D2_like 705 1020 - -
Ssu7g1891 1282 CDD ABC_MTABC3_MDL1_MDL2 382 620 - -
Ssu7g1891 1282 Pfam ABC transporter transmembrane region 715 987 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g1891 1282 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g1891 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 620 IPR027417 -
Ssu7g1891 1282 SUPERFAMILY ABC transporter transmembrane region 46 366 IPR036640 GO:0005524|GO:0016021
Ssu7g1891 1282 ProSitePatterns ABC transporters family signature. 1177 1191 IPR017871 GO:0005524
Ssu7g1891 1282 Gene3D - 1027 1281 IPR027417 -
Ssu7g1891 1282 MobiDBLite consensus disorder prediction 625 667 - -
Ssu7g1891 1282 ProSitePatterns ABC transporters family signature. 521 535 IPR017871 GO:0005524
Ssu7g1891 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 382 618 IPR003439 GO:0005524
Ssu7g1891 1282 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1037 1274 IPR003439 GO:0005524
Ssu7g1891 1282 CDD ABC_6TM_Pgp_ABCB1_D1_like 59 343 - -
Ssu7g1891 1282 MobiDBLite consensus disorder prediction 641 667 - -
Ssu7g1891 1282 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 716 1002 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g1891 1282 Gene3D - 380 637 IPR027417 -
Ssu7g1891 1282 SUPERFAMILY ABC transporter transmembrane region 703 1021 IPR036640 GO:0005524|GO:0016021
Ssu7g1891 1282 CDD ABC_MTABC3_MDL1_MDL2 1037 1275 - -
Ssu7g1891 1282 MobiDBLite consensus disorder prediction 1 39 - -
Ssu7g1891 1282 Gene3D ABC transporter type 1, transmembrane domain 105 1011 IPR036640 GO:0005524|GO:0016021
Ssu7g1891 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1027 1274 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1891 Ssu-Chr7 37919329 37924542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1891 30 1281 Calmodulin-binding Proteins AT2G36910 45.820 0.0 1075