Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1885 ATGGAAAACCACCAACAAATGCAACAACCCCGCCGTGAATTGACCTTACTAAGATCCACCGATTTCCTCCGCCAGAATCCTAATCTAGATCCGACAACCGTCAACACCGGAGACCATAACGATCCTTCCATCAAAGAAGTTGATTTTTTCTCATTAAGTTCACCGCTCAATACTGATAACTCGAATAGTAATATTAACCACCATCAGCCTCGTCAAGAGGACCCGCACCATCGTCATTCGAATGTGACTAAAGATGATGGATCACCAACTCTTCTCAGTGATCAGCTCGTAAACACCACGCTGAATTTAACCTGTACAAGTGCTGAATTGTCAAGATCATCAGCAAATGAGGAAGATTCTAAATCTCTGTTTAATACACTTCAAAAGGAATTTCTGAGACTACAAGAAGAAAATTGCAAGTTGAGAACTATGTTGGACCAAATCACCAAAAACTACCACCAGCTACGATTGCTCATCGCTTTGCCGTATCAGTTTCATCCTGATCGTGGAGAAGATGCTCTTGAACAATCATCCTCACAGAGTTGGGGATCATCCAAGCCTAGTGAGTTTCCTTACAAAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTTtgATTAGCGATGGATGTCAGTGGAGaaaatatggacaaaaaataGCCAAAGGTAATCCTTGTCCCCGAGCCTATTATCGTTGCACTATGGACACAGGATGCCCAGTTCGTAAGCAGGTACAAAGATGTGCAGAGGATAAGACAGTGCTAATAACAACCTACGAAGGCAATCATAACCACCCTCTCCCACCCACTGCCACAACCATGGCCAATTCAACCTCAGCAGCTGCAGCCATGTTCTTATCTTCTTCAAGTTCAACAACTAACAATGAAGCACTAAGTAACACTGTCTTCTCTTCTATGCCCTACATCCCAATGGCAACCCTTTCGGCCTCTGCACCATTCCCCACTATCACCCTTGACATGACCACCAATCCTATGCAACTACACCGAGATCCCTACTCTGGCCTGACATCCCCTCTTCCATTACATGTAGCTACTTTGCCTCAGCTATTAGGACACCCCATTATCTCCCCCCATAAGATGTCACATCCACTAGGCCAACGACAACCTTCGTTTATGACAGAGACGATGACTGCAACTATTGCTTCGAATCCAAATTTTACTGTAGCATTGGCAGCTGCGATCTCATCAATTATTGGAGCTCCTAGAGGCCGTGATggaaataacaacaatagtagTAATGATGGAAGTGTTTTTCCCCTTAATGGAACATCTATATTGCCTAGGCACATTTAG 1317 0.4336 MENHQQMQQPRRELTLLRSTDFLRQNPNLDPTTVNTGDHNDPSIKEVDFFSLSSPLNTDNSNSNINHHQPRQEDPHHRHSNVTKDDGSPTLLSDQLVNTTLNLTCTSAELSRSSANEEDSKSLFNTLQKEFLRLQEENCKLRTMLDQITKNYHQLRLLIALPYQFHPDRGEDALEQSSSQSWGSSKPSEFPYKKARVSVRARSEAPLISDGCQWRKYGQKIAKGNPCPRAYYRCTMDTGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPTATTMANSTSAAAAMFLSSSSSTTNNEALSNTVFSSMPYIPMATLSASAPFPTITLDMTTNPMQLHRDPYSGLTSPLPLHVATLPQLLGHPIISPHKMSHPLGQRQPSFMTETMTATIASNPNFTVALAAAISSIIGAPRGRDGNNNNSSNDGSVFPLNGTSILPRHI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1885 438 MobiDBLite consensus disorder prediction 24 40 - -
Ssu7g1885 438 MobiDBLite consensus disorder prediction 410 438 - -
Ssu7g1885 438 Gene3D WRKY domain 193 270 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g1885 438 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 39 172 IPR044810 GO:0003700
Ssu7g1885 438 MobiDBLite consensus disorder prediction 69 84 - -
Ssu7g1885 438 MobiDBLite consensus disorder prediction 50 68 - -
Ssu7g1885 438 ProSiteProfiles WRKY domain profile. 203 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1885 438 Pfam WRKY DNA -binding domain 210 267 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1885 438 SUPERFAMILY WRKY DNA-binding domain 201 269 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu7g1885 438 MobiDBLite consensus disorder prediction 24 92 - -
Ssu7g1885 438 SMART WRKY_cls 208 268 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu7g1885 438 MobiDBLite consensus disorder prediction 410 428 - -
Ssu7g1885 438 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 172 421 - -
Ssu7g1885 438 PANTHER WRKY TRANSCRIPTION FACTOR 47-RELATED 39 172 - -
Ssu7g1885 438 MobiDBLite consensus disorder prediction 170 189 - -
Ssu7g1885 438 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 172 421 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1885 Ssu-Chr7 37798845 37803815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1885 188 406 WRKY Transcription Factor Family AT4G04450 54.237 7.37e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu7g1885 WRKY 3.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1885 - - gmx:100785933 556.599
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0515 4 8195269 8199091 Ssu7g1885 7 37798845 37803815 PCT