Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1883 ATGGGCAAAGCCTCTAGTTCTTCCTCCTCATCTATCACCAGCTGCAGGAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAAAATAGTGAAGACCTTCGCACAGATCTTAGACTTGGACTGAGCATTTCCGCCACTCAACATGTTGGCTCTTCTATTTCAGGGGGGCATTGGCAACCGATGCAGCCATATCTAAGTAGTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGAATTCCGATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGCTACCACGAGTTAGTAAAGACTCTTGAACAAATGTTTGACACTACCATTCTGTGGGGGACTGAGGTGGACGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCAGCTGTGAAGAGGTTGAAGATCACAAGGGTCGAGACATTCGGGTGA 525 0.4571 MGKASSSSSSSITSCRNPSNSTASSLTHQNSEDLRTDLRLGLSISATQHVGSSISGGHWQPMQPYLSSSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHELVKTLEQMFDTTILWGTEVDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSAVKRLKITRVETFG 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1883 174 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Ssu7g1883 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 174 IPR003311 GO:0005634|GO:0006355
Ssu7g1883 174 MobiDBLite consensus disorder prediction 1 30 - -
Ssu7g1883 174 SUPERFAMILY CAD & PB1 domains 78 168 - -
Ssu7g1883 174 PANTHER AUXIN-INDUCED PROTEIN 2 174 - -
Ssu7g1883 174 Gene3D - 76 173 - -
Ssu7g1883 174 ProSiteProfiles PB1 domain profile. 82 172 IPR000270 GO:0005515
Ssu7g1883 174 Pfam AUX/IAA family 71 169 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1883 Ssu-Chr7 37741731 37742740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1883 86 167 B3 DNA Binding Superfamily AT4G23980 38.554 4.85e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu7g1883 AUX_IAA 1.8e-28 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1883 K14484 - gmx:100781660 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0513 4 8168209 8169214 Ssu7g1883 7 37741731 37742740 PCT