Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1880 atggcTGAGAAGGTGCCTGATTCCACCCGACCAGGGATGACTAGAAGCTCCTCCTATCTAGATTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGCCAACTTCACGTGCAAGGAGGTTCGTCATCAAGTGTCACACGAATGACTCCTTCGTGCGATGGGTATTCAGTAAAAGCAATTGATGAAGATGCCTTCAATGCAAAAAATGCAAGGTTAAGCTCATTATACTCGCTTATGGACCTCCCAGTTCAAAGGGACTCTGCCCTGGACAATTCACAACCAAATTCTCATCAAAGCAATGATAAGAATTCAAGAACGGAATCAAGCCAAACCCCAACAACAAACTCACGGAAACAAGACTTGGGAAAGGTCAATTACTCCACCAACATTTTAAGACCTTCAATGTTTCTTATATCTACTTTCCAGGGAAACAGCACAACACTGCCTACAAACAATTCAGCTTTAGAACGAGTAGAGGAGATTGAAGCTAGTAAGTTTGCAAAAGCTGCAGCTACTGCTTCTAGCAGCAAAGCTGATCATTCCTTAGTGATCGACTCATACAAAGGATCACAGGGTCTCACAGGACTTGAAAGGCAGAACCCTTTAACCTCTGATGCATCAAACCCGGTTCCAAGAAGTGAGGAAACACCTCCTGATGAGCAATCCGAAGCTGTTGGTCATAATAGTGCCATTAATTTTCACGGATCTCATGGTCAATATAATAACCAAACCTCAAGCTCAGCGGGACTTAAAGCAAAGGGAAAAGCTGTTACTAACTATCGTCATGAAGCCTTGCTAGAATCTTCTTCCCTCTGCTCCCTTGGAGCCTCGAATAACAGAAACGTTTGTAGCAGGAAACATGATGACATCGATGACTCAACGTATTTAAGCGATAATGATGAAGAACCGGAAGATGCGGTGAAGGAAAAGCCTGCTCGGGAGAGCACTGGAGTGAAGAGAAGTAGGAACGCAGAAACCCATAATTTATGTGAAAGGAAGCGAAGAGATAAGATCAACAAGAGGATGCGTATATTAAAGGAGCTCATACCCAATTGCAATAAGACGGACAAAGCTTCAATGCTTGACGACGCCATCGAATATCTTCAGACCCTAAAGCTTCAGTTACAGATTATGTCAATGGGTGCTGGATTTTGTATGCCTTTTATGATGTTACCTAATGCCACTCATCATATGATCAACACACCCGATTTACATCAGTTAATGGGAGTTGGAATGGGCTTCAGGCCAGGCACAGCCATCCCTTTCAGCCTTCCTCAGTTTCCTATCACACCTTTGCCTGGGATCACTGACAACGGAATTCAGATGTTTGGTTTCCCTAACCAAGTGCCACCCATGCCCATTTCTCATGCACCTATTATTCCCATGGTTGGAAATCCTTCCACACAACCCCCTCTGGCAACTAGCACAGCTACCAACCTGGCAGAAAACCCTGCTTCTTCCCAGTTAACAACTACTCTAATGGCCTCGGTCCCCAAGAACTCATATCTTAGTGGACAAGCTGAATATGCAACAAAGCAAGCACCGAGTCAGGTTTCCCTTCACCACTAG 1578 0.4436 MAEKVPDSTRPGMTRSSSYLDSIYGKGSLELVWENGQLHVQGGSSSSVTRMTPSCDGYSVKAIDEDAFNAKNARLSSLYSLMDLPVQRDSALDNSQPNSHQSNDKNSRTESSQTPTTNSRKQDLGKVNYSTNILRPSMFLISTFQGNSTTLPTNNSALERVEEIEASKFAKAAATASSSKADHSLVIDSYKGSQGLTGLERQNPLTSDASNPVPRSEETPPDEQSEAVGHNSAINFHGSHGQYNNQTSSSAGLKAKGKAVTNYRHEALLESSSLCSLGASNNRNVCSRKHDDIDDSTYLSDNDEEPEDAVKEKPARESTGVKRSRNAETHNLCERKRRDKINKRMRILKELIPNCNKTDKASMLDDAIEYLQTLKLQLQIMSMGAGFCMPFMMLPNATHHMINTPDLHQLMGVGMGFRPGTAIPFSLPQFPITPLPGITDNGIQMFGFPNQVPPMPISHAPIIPMVGNPSTQPPLATSTATNLAENPASSQLTTTLMASVPKNSYLSGQAEYATKQAPSQVSLHH 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1880 525 Pfam Helix-loop-helix DNA-binding domain 328 374 IPR011598 GO:0046983
Ssu7g1880 525 MobiDBLite consensus disorder prediction 304 329 - -
Ssu7g1880 525 MobiDBLite consensus disorder prediction 195 227 - -
Ssu7g1880 525 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 323 386 IPR036638 GO:0046983
Ssu7g1880 525 PANTHER TRANSCRIPTION FACTOR PIF3 1 156 IPR044273 GO:0003700|GO:0006355
Ssu7g1880 525 Gene3D - 321 382 IPR036638 GO:0046983
Ssu7g1880 525 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 325 374 IPR011598 GO:0046983
Ssu7g1880 525 PANTHER TRANSCRIPTION FACTOR PIF3 105 524 IPR044273 GO:0003700|GO:0006355
Ssu7g1880 525 MobiDBLite consensus disorder prediction 285 329 - -
Ssu7g1880 525 MobiDBLite consensus disorder prediction 195 218 - -
Ssu7g1880 525 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 105 524 - -
Ssu7g1880 525 SMART finulus 331 380 IPR011598 GO:0046983
Ssu7g1880 525 MobiDBLite consensus disorder prediction 89 127 - -
Ssu7g1880 525 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 156 - -
Ssu7g1880 525 CDD bHLH_AtPIF_like 325 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1880 Ssu-Chr7 37698260 37700334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1880 208 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 38.206 7.49e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g1880 HLH 8.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1880 K12126 - gmx:100818543 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0512 4 8144820 8147039 Ssu7g1880 7 37698260 37700334 PCT