Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1877 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTTTGGTCTCCTGAGGAGGATGAAAAACTTCTGAGGCATATAACACAGTATGGTCATGGATGTTGGAGTTCTGTGCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGCAGGCTTAGGTGGATCAACTACTTAAGGCCTGATTTAAAGAGAGGAACATTctcacaagaagaagaaaacgtTATCATTGACCTTCATGCAGTATTAGGGAACAGGTGGTCTCAAATTGCGGCACAGTTGCCGGGGAGGACTGACAACGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAGAAACTGAGGCAAAAAGGCATAGACCCTGTCACCCACAAACCACTGTCCGAGATTGAGAATGGGGAGGGCAATGGTAGGAGCCAAGAGAAAGCACCAGAAGTATCCAATGAATTGAACCTCCTGAAATCAGAGAGCTCCAAGTCAGATTCAGCTTCCTATGATCAGAGAACATCAATTTCTCCAAAAGCCTATGCACCCGAGATGGATGGTTCTTGCAGCTCCAAGATTTACTGCAAAAGTGACAGCAATTTTGCAACCAACAACTGTTACAGCAACAAAGACTTGTTCCTGGACAGGTTTATGAGTAGCCGCCAGGATAGCTACACCACTAGTTGCCAACCCTCAGATTTGATGGGAAATTTTCCCATTCAGATGAGTTATGCAACCACTGACTGTCTCCCAAATGATTCAAACTCTGGTCATTGGTTCAGCCAAACTGGAAGGCCTTTTGATATGAACTCTGAATTTCCTTTCAATGCAGCCACTTCTATTCCTACACCTACAACCAGCTTGTTTCTTCCTAATTCTTTTTGCTACAAGCCTTCACTTGCTGTTCCCTCTGACAATGTTTCTACAGCCTATGGATCCCATTACTGGGAAGCCAGCGCTTCCAACAATAGCAATAGCAGCATTAGGAGTAATAGCAGCACAGAGTTGAGAAGTAGCAGCCCCTTGAACATCCTTTCTTCTTGGGGATTGGCAGATTGTAGCACCTCTACTAAAGAGGCACAAATTCATATGATGGAGAATCACACAGAAGAAGCTAAGTGGGATGAGTACCTTCATAACCCAATCTCAATGCTGGCTTCTGTACAAAATCAAGCTCCTGAATCCTTATGCAACGAGATAAAAACATCCATGCATTTGGTACCTGATACTTTGGGGGCTATGTTACCTCATACCAAGCAGGAAGAGCCGTCTCAAACTTCTAGTATCTTTTCCAGAGACATCCAGAAGCTCAGGGCAGCCTTTGGACACATGTAA 1326 0.4389 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITQYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENVIIDLHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSEIENGEGNGRSQEKAPEVSNELNLLKSESSKSDSASYDQRTSISPKAYAPEMDGSCSSKIYCKSDSNFATNNCYSNKDLFLDRFMSSRQDSYTTSCQPSDLMGNFPIQMSYATTDCLPNDSNSGHWFSQTGRPFDMNSEFPFNAATSIPTPTTSLFLPNSFCYKPSLAVPSDNVSTAYGSHYWEASASNNSNSSIRSNSSTELRSSSPLNILSSWGLADCSTSTKEAQIHMMENHTEEAKWDEYLHNPISMLASVQNQAPESLCNEIKTSMHLVPDTLGAMLPHTKQEEPSQTSSIFSRDIQKLRAAFGHM 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1877 441 Gene3D - 11 67 - -
Ssu7g1877 441 MobiDBLite consensus disorder prediction 143 173 - -
Ssu7g1877 441 MobiDBLite consensus disorder prediction 123 178 - -
Ssu7g1877 441 PANTHER HOMEODOMAIN-RELATED 1 434 - -
Ssu7g1877 441 Gene3D - 68 136 - -
Ssu7g1877 441 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu7g1877 441 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu7g1877 441 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Ssu7g1877 441 CDD SANT 17 61 IPR001005 -
Ssu7g1877 441 SMART sant 13 63 IPR001005 -
Ssu7g1877 441 SMART sant 66 114 IPR001005 -
Ssu7g1877 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu7g1877 441 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu7g1877 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu7g1877 441 CDD SANT 69 109 IPR001005 -
Ssu7g1877 441 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu7g1877 441 PANTHER MYB DOMAIN PROTEIN 55 1 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1877 Ssu-Chr7 37630964 37632496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1877 1 440 MYB Transcription Factor Family AT1G09540 40.899 3.47e-91 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu7g1877 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1877 K09422 - gmx:100815881 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0510 4 8061122 8062593 Ssu7g1877 7 37630964 37632496 PCT