Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1872 ATGACATCTTCATTCTCAACGCAGTTGGTGCAAAGTCAGAACCTACCCCCTCGTTTTCATCATCATGTCCAGggTAATTTTAGCCAAGATGTGTCAAAGGTTCCAAGGACACATGTGGTCTGTAGCAGTACCAAATCACAGCTTGGTTATGGTAAAACATTGGCGTCAAGATGTCATTATGCTGTGAGATTTTCTGTCTCACGACAATCTGAAGCAAAATCAATCACATATAGGAGAATGACATGTACTAATGCTAAGGAAAATGTTCTAGAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGGGGGAGAACCTGCTGGCAGGATTGTTTTCGGCCTATTTGGAGAGGCTGTTCCTAAAACAGTTGAAAATTTCCGGGCTTTATGCACAGGAGAGAAAGGATATGGCTACAAAGGATGCTACTTCCATCGTATAATCAGAGATTTCATGATTCAGGGAGGGGACTTCACTGAAGGAGATGGAACTGGTGGAATCAGTATCTATGGTGCTAGATTTGAAGATGAAAATTTTGCCTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGCAGTCAATTTTTTATCTGCACTGTACAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATGTTGTGAGGACACTTGAATCGCAGGATACAAGCAAGTTTGATAAGCCTCGGATGTCATGCAAAATTGCTAATTCTGGGGAACTGCCTATAGATAGTTGA 792 0.4179 MTSSFSTQLVQSQNLPPRFHHHVQGNFSQDVSKVPRTHVVCSSTKSQLGYGKTLASRCHYAVRFSVSRQSEAKSITYRRMTCTNAKENVLELQAKVTNKCFFDVEIGGEPAGRIVFGLFGEAVPKTVENFRALCTGEKGYGYKGCYFHRIIRDFMIQGGDFTEGDGTGGISIYGARFEDENFALKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVIDGMDVVRTLESQDTSKFDKPRMSCKIANSGELPIDS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1872 263 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 102 256 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 218 233 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 190 205 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 205 217 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 147 159 IPR002130 GO:0000413|GO:0003755
Ssu7g1872 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 54 263 - -
Ssu7g1872 263 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 54 263 - -
Ssu7g1872 263 SUPERFAMILY Cyclophilin-like 94 259 IPR029000 -
Ssu7g1872 263 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 142 159 IPR020892 GO:0003755|GO:0006457
Ssu7g1872 263 Gene3D - 84 262 IPR029000 -
Ssu7g1872 263 CDD cyclophilin_ABH_like 99 257 - -
Ssu7g1872 263 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 101 258 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1872 Ssu-Chr7 37576336 37579148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1872 112 253 U-box Gene Family AT5G67530 46.853 8.62e-31 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1872 K03768 - gmx:100526955 484.182