Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1866 ATGCGCTCCCTAGTGACAATGGGGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCAACCTGCCTTTGAGATGGTCGCCAAATACAAGGCTGAAATTGCCCCAATTTTTTACAGAAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTACCATCAATGGGACAGACTATTTCGAACTGGTGCTTATAAGCAACGTAGGGGGAGCAGGGGACATCTCTCGAGTTTGGATCAAAGGGTCCAAAATGAGTAACTGGGAATCCATGTCAAGGAATTGGGGAGCTAACTGGCAAAGCTTAAGCTATCTCAACAGTCAGAGCTTGTCCTTCAGAGTCCAACTCAGCAATGGAAGGATTCGCACAGCTTATAATGTGGCACCGTCCTCTTGGACATTTGGCAGTCCTTCATCAGCAAGGATAATGTTTCGACTTTTAAGTGTCTTAAAGGAACTAGAAGACATGGGCATACTTAATGTGGCCCTTGTTAGATTGGAAGTCCTTGTCTCATTTCACGGAAATAAGCGACTTTCAATTTATCGGTGGCTTTGA 552 0.4475 MRSLVTMGVGVILLDHTLTCQPAFEMVAKYKAEIAPIFYRKVGCKRTGGIRFTINGTDYFELVLISNVGGAGDISRVWIKGSKMSNWESMSRNWGANWQSLSYLNSQSLSFRVQLSNGRIRTAYNVAPSSWTFGSPSSARIMFRLLSVLKELEDMGILNVALVRLEVLVSFHGNKRLSIYRWL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1866 183 Gene3D - 49 143 IPR036749 -
Ssu7g1866 183 PANTHER EXPANSIN-A15 18 139 IPR002963 GO:0009664
Ssu7g1866 183 SUPERFAMILY PHL pollen allergen 46 134 IPR036749 -
Ssu7g1866 183 Pfam Expansin C-terminal domain 50 128 IPR007117 -
Ssu7g1866 183 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 59 139 IPR007117 -
Ssu7g1866 183 PANTHER EXPANSIN 18 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1866 Ssu-Chr7 37535420 37541048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1866 16 143 Expansin Gene Family AT4G01630 64.844 4.20e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1866 - - gmx:100813434 209.534