Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1860 ATGGCTTCCATCATAGGTGCATCTTCTTCCGTTTACAAAGTCCCCTCTCTCCAACTCCTCAAAAGACCAGCCGCCGCAACCACCTCCGTTTCCTTCAACACCCTTCCCCGTAACGCCGCGCTCTGTTCCGTTCCTTCCGCCATTGCCACCCCCACCTCATCCCTCCTCGCCGAACAACCCTTCAAGGGTTTAACTCTGGACGGCGTTGCCGATAACGACCAATTTGGCCATGACTACGAAACCGACACCCCTGCCAACGTCAGCGACCACGAGCTCGACATTTCCAAGTTGGGTCTACCCTCGCGCCTCGTCCACTCGCTGCAGAAACGTGGGATCACGACTCTTTTCCCCATTCAGAGAGCTGTGTTACTGCCTGCGCTAGAAGGTAGAGATATCATTGCTCGGGCAAAGACCGGGACTGGCAAAACATTAGCATTCGGAATTCCAATTCTTAAAGGCCTCACCGATGATGAACGAAGTCCTCACAGGCTTCCGAAAGCGTTGGTCCTTGCACCTACCAGGGAGTTAGCAAAGCAAGTTGAGAAAGAGATACAAGAATCTGCGCCTTACCTCAGCACGGTTTGCGTTTACGGTGGTGTTTCTTATGTAACACAGCAGACCGCGCTTTCGCGCggtgttgatgtggtggtcgGAACGCCGGGTAGAGTAATTGACCTTATGAATGGAAACAGCCTTAAACTGAGTGAGGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTCATTTTAGATAAGGTCCCAGCTCAGCGCCAGACCATGCTTTTCTCTGCGACCATGCCCGGTTGGGTCAAGAAACTGTCCAGAAAATATTTGAACAATCCATTGACAATTGATTTGGTTGGTGAACAAGAAGAGAAGCTTGCTGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGGATAGTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGAGTATTGTTTTCACGCAGACAAAAAGGGATGCTGATGAAGTATCATTGTCATTAACAAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAGAGAACACTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCTGAGACTTTTGTACATCGTTCTGGTCGTACTGGGCGTGCAGGTAAAGAGGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGAACAGTTAGATCCCTTGAGCGCGATGTAGGCtgcaaatttgaatttattagtCCACCAGCCATGGAAGAGATTTTGGAGTCATCTGCTGAACAAGTTGTTGCTACACTTAATAGAGTTCATCCTGAGTCTGTTGAATTTTTCACTGCAACTGCACAAAAGTTGGTTGAAGAACAAGGAGCAAGTGCCCTTGCAGCTGCTCTTGCACAGATGAGTGGATTCTCTCGACCTCCATCATGTCGATCTCTTATCGATCATGAACAGGGATGGATTACATTGCAACTGACTCGAGATTCAGATACTTCTAGAAGATTTTTTTCTGCAAGATCTGTCACTGGTTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGttggaaaaatacatttaatagcaGATGAGAAGGTTCAAGGAGCTGTTTTTGATGTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGGAACTGCCATCTGGAAACACTATTTCCAAAATCACCAAGTTACCTCTTTTGCAAGACGATGAACCTCCAAGTGATTTCTATGGGAAGTTTTCTGACAGAGATGGAAGTAACCGAAGAGGTTCTAGGGACCAGAGAGGTTTTAGAAGTTCACGGGGATGGGAAGGAGGCCAAGGCTCTGATGGTGAGTTTGGACGAGGTGGTAAAAGTTTCAGAGCTGGCAACAACAGGTCTCGAATGGGAAAAAGCAGCGGGGATGACTGGCTAATTGGAGGTAGACGATCAAGCAGGTTTTCGTCATCCAACAGAGGCGGCCACGGAGGGGCCTGTTTTAATTGTGGACAATTTGGGCATCGGACATCAGATTGTCCCAAAAAACGAGACCTTTTCTAG 2184 0.4574 MASIIGASSSVYKVPSLQLLKRPAAATTSVSFNTLPRNAALCSVPSAIATPTSSLLAEQPFKGLTLDGVADNDQFGHDYETDTPANVSDHELDISKLGLPSRLVHSLQKRGITTLFPIQRAVLLPALEGRDIIARAKTGTGKTLAFGIPILKGLTDDERSPHRLPKALVLAPTRELAKQVEKEIQESAPYLSTVCVYGGVSYVTQQTALSRGVDVVVGTPGRVIDLMNGNSLKLSEVQYLVLDEADQMLAVGFEEDVEVILDKVPAQRQTMLFSATMPGWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRIVLSDLITVYAKGGKSIVFTQTKRDADEVSLSLTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEFISPPAMEEILESSAEQVVATLNRVHPESVEFFTATAQKLVEEQGASALAAALAQMSGFSRPPSCRSLIDHEQGWITLQLTRDSDTSRRFFSARSVTGFLSDVYSPAADEVGKIHLIADEKVQGAVFDVPEDIAKELLNKELPSGNTISKITKLPLLQDDEPPSDFYGKFSDRDGSNRRGSRDQRGFRSSRGWEGGQGSDGEFGRGGKSFRAGNNRSRMGKSSGDDWLIGGRRSSRFSSSNRGGHGGACFNCGQFGHRTSDCPKKRDLF 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1860 727 MobiDBLite consensus disorder prediction 622 704 - -
Ssu7g1860 727 ProSiteProfiles Zinc finger CCHC-type profile. 707 722 IPR001878 GO:0003676|GO:0008270
Ssu7g1860 727 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 450 IPR027417 -
Ssu7g1860 727 SMART c2hcfinal6 706 722 IPR001878 GO:0003676|GO:0008270
Ssu7g1860 727 Pfam Helicase conserved C-terminal domain 325 429 IPR001650 -
Ssu7g1860 727 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 469 IPR001650 -
Ssu7g1860 727 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 12 717 - -
Ssu7g1860 727 Pfam Zinc knuckle 706 722 IPR001878 GO:0003676|GO:0008270
Ssu7g1860 727 Gene3D - 93 299 IPR027417 -
Ssu7g1860 727 CDD SF2_C_DEAD 321 438 - -
Ssu7g1860 727 SUPERFAMILY Retrovirus zinc finger-like domains 688 725 IPR036875 GO:0003676|GO:0008270
Ssu7g1860 727 Gene3D - 671 726 - -
Ssu7g1860 727 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 295 IPR014001 -
Ssu7g1860 727 SMART helicmild6 349 429 IPR001650 -
Ssu7g1860 727 MobiDBLite consensus disorder prediction 623 647 - -
Ssu7g1860 727 CDD GUCT_Hera 524 603 - -
Ssu7g1860 727 Gene3D - 315 515 IPR027417 -
Ssu7g1860 727 SMART ultradead3 111 312 IPR014001 -
Ssu7g1860 727 Pfam DEAD/DEAH box helicase 116 284 IPR011545 GO:0003676|GO:0005524
Ssu7g1860 727 CDD DEADc 103 296 - -
Ssu7g1860 727 Pfam GUCT (NUC152) domain 516 616 IPR012562 GO:0003723|GO:0004386|GO:0005524
Ssu7g1860 727 PANTHER - 12 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1860 Ssu-Chr7 37389557 37394804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1860 118 451 Eukaryotic Initiation Factors Gene Family AT1G72730 38.348 5.54e-64 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1860 - - gmx:100815040 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0495 4 7849461 7855024 Ssu7g1860 7 37389557 37394804 PCT