Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1850 ATGGGCAACCTCTTCTGGCTTGGCATTGTTGCAGCACTTGTTTTTAGCTTCTGGGTTGATGCCCTTTCAGCCTATCAATATCACCACTTCAATGAAACCGAGTTGTCCTTGTTGGAGGCTCAAGAACAAGCATCCTCCTCCCTCCTTGGGAGGACTCCTCTCATGGTAGGACTCACCCTCATTCAAAGTGCTGCTGCCAAAGGAGCAGTCTGCTTGGATGGAACATTGCCTGGTTATCATCTGCATCGGGGATACGGATCGGGAGCAAACAGCTGGCTCGTTAATTTAGAGGGAGGTGGGTGGTGTAATAACGTTAGAACATGTGTTTATCGCAAGAAAACACGGCGTGGATCATCAACATTCATGGAAAAACAGATACCTTTTACAGGAATATTAAGCAATAATGCTGAAGATAATCCAGATTTTTTCAACTGGAACAGAGTGAAAATTCGTTACTGTGATGGTGCCTCTTTTGCCGGGGATGGTGAAGATAAGGCTGCACAACTGCAATTTAGAGGACAACGTATTTGGTTGGCTGCAATGGAAGATTTGATGTCAAAGGGAATGCATACTAATATTTCTGCTTCAGGCCTTCTCTCTGGATGCTCGGCTGGTGGTCTGGCTACTATTATACACTGTGATGAATTCCGAGGTTTATTCCCACAGACTACCAAAGTGAAGTGTCTCAGTGATGCTGGGTTATTTCTTGATGCGATTGATGTGTCTAGGGGACATACCATCAGGAATTTTTTCAGTGGTGTCGTATGGCTGCAGGGAGTGAAGAAGAATCTCCCGTCCAGTTGCACCAATCATCTTGATCCCACTTCGTGCTTCTTCCCTCAGAACTTGATTGCCAGTATTAGAACACCGCTATTCATTCTTAATACTGCCTATGACTCATGGCAGGTTCAATCAAGCTTAGCTCCTTCGTCAGCAGATACCCATGGCTATTGGCATGATTGTAGATTAAATCATGCTAAATGTACTACTTCACAAATCCATTTTTTGCAAGGATTCAGGAATCAAATGCTGAATGTTATTAGAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAGGCAGGATACATGGTTTGCTGACAATTCTCCTGTCATTGGGAACAAGGCAATTGCTCTGGCTGTTGGAGACTGGTATTTCGACCGAGCAGTTGTTAAGGCCATTGATTGTCCTTACCCTTGCGATAATACATGCCACCATCTTGTCTTCAGATGA 1266 0.4415 MGNLFWLGIVAALVFSFWVDALSAYQYHHFNETELSLLEAQEQASSSLLGRTPLMVGLTLIQSAAAKGAVCLDGTLPGYHLHRGYGSGANSWLVNLEGGGWCNNVRTCVYRKKTRRGSSTFMEKQIPFTGILSNNAEDNPDFFNWNRVKIRYCDGASFAGDGEDKAAQLQFRGQRIWLAAMEDLMSKGMHTNISASGLLSGCSAGGLATIIHCDEFRGLFPQTTKVKCLSDAGLFLDAIDVSRGHTIRNFFSGVVWLQGVKKNLPSSCTNHLDPTSCFFPQNLIASIRTPLFILNTAYDSWQVQSSLAPSSADTHGYWHDCRLNHAKCTTSQIHFLQGFRNQMLNVIRGFSRSRQNGLFINSCFAHCQSERQDTWFADNSPVIGNKAIALAVGDWYFDRAVVKAIDCPYPCDNTCHHLVFR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1850 421 Pfam Pectinacetylesterase 53 400 IPR004963 GO:0016787
Ssu7g1850 421 PANTHER NOTUM-RELATED 4 420 IPR004963 GO:0016787
Ssu7g1850 421 PANTHER PECTIN ACETYLESTERASE 4 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1850 Ssu-Chr7 37264949 37269210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1850 55 421 Carbohydrate Esterase AT1G57590 71.935 0.0 584
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1850 K19882 - gmx:100810716 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0508 4 8019469 8024862 Ssu7g1850 7 37264949 37269210 ECH
Ssu7g1850 7 37264949 37269210 Ssu4g0508 4 8019469 8024862 ECH
Ssu7g1850 7 37264949 37269210 Ssu7g1850 7 37264949 37269210 ECH
Ssu4g0481 4 7667869 7672364 Ssu7g1850 7 37264949 37269210 ECH
Ssu6g0516 6 7991351 7997058 Ssu7g1850 7 37264949 37269210 ECH
Ssu4g0481 4 7667869 7672364 Ssu7g1850 7 37264949 37269210 PCT